RACS_id Recurrent.Gain.Loss X.log10.pValue. chr start stop KnownDrivers nGenes FragileSiteName FragileSiteCommon FragileSiteRare toplvl GenesInSegment Genetic_Coordinates KnownDrivers_Extended locus cnaPANCAN1 gain 1.556225 19 28240494 31841133 CCNE1 9 0 0 0 C19orf12,CCNE1,PLEKHF1,POP4,TSHZ3,UQCRFS1,URI1,VSTM2B,ZNF536 chr19:28240494-31841133 CCNE1 19q11 cnaPANCAN2 loss 4.27089 19 284018 2429804 STK11 86 FRA19B 0 1 1 ABCA7,ABHD17A,ADAMTSL5,ADAT3,AMH,AP3D1,APC2,ARID3A,ATP5D,ATP8B3,AZU1,BSG,BTBD2,C19orf24,C19orf25,C19orf26,C19orf35,C2CD4C,CDC34,CFD,CIRBP,CNN2,CSNK1G2,DAZAP1,DOT1L,EFNA2,ELANE,FGF22,FSTL3,GAMT,GPX4,GRIN3B,GZMM,HCN2,HMHA1,IZUMO4,JSRP1,KISS1R,KLF16,LINGO3,LMNB2,LPPR3,LSM7,MADCAM1,MBD3,MED16,MEX3D,MIDN,MIER2,MISP,MKNK2,MOB3A,MUM1,NDUFS7,OAZ1,ODF3L2,ONECUT3,PALM,PCSK4,PLEKHJ1,PLK5,POLR2E,POLRMT,PPAP2C,PRSS57,PRTN3,PTBP1,R3HDM4,REEP6,REXO1,RNF126,RPS15,SBNO2,SCAMP4,SF3A2,SHC2,STK11,TCF3,THEG,TIMM13,TMEM259,TMPRSS9,TPGS1,UQCR11,UQCR11,WDR18 chr19:284018-2429804 STK11 19p13.3 cnaPANCAN3 loss 2.48483 19 3110881 3123454 GNA11 1 FRA19B 0 1 1 GNA11 chr19:3110881-3123454 GNA11 19p13.3 cnaPANCAN4 loss 14.557537 19 3977359 3979418 1 FRA19B 0 1 1 EEF2 chr19:3977359-3979418 19p13.3 cnaPANCAN5 loss 3.336573 19 5031608 5040157 1 FRA19B 0 1 1 KDM4B chr19:5031608-5040157 19p13.3 cnaPANCAN6 loss 2.060457 19 7371001 10228223 87 FRA19B 0 1 1 ACTL9,ADAMTS10,ANGPTL4,ANGPTL6,ARHGEF18,C19orf45,C19orf59,C19orf66,C19orf82,CAMSAP3,CCL25,CD209,CD320,CERS4,CLEC4G,CLEC4M,COL5A3,CTB-133G6.1,CTD-2207O23.10,CTD-2207O23.12,CTD-2207O23.3,CTD-3193O13.9,CTD-3214H19.16,CTD-3214H19.4,CTXN1,EIF3G,ELAVL1,EVI5L,FBN3,FBXL12,FCER2,HNRNPM,KANK3,LRRC8E,MAP2K7,MARCH2,MBD3L1,MCOLN1,MUC16,MYO1F,NDUFA7,NDUFA7,OLFM2,OR1M1,OR2Z1,OR7D2,OR7D4,OR7E24,OR7G1,OR7G2,OR7G3,P2RY11,PCP2,PET100,PEX11G,PIN1,PNPLA6,PPAN,PPAN-P2RY11,PRAM1,RAB11B,RDH8,RETN,RPS28,SNAPC2,STXBP2,TGFBR3L,TIMM44,TRAPPC5,UBL5,XAB2,ZNF121,ZNF177,ZNF266,ZNF317,ZNF358,ZNF414,ZNF426,ZNF558,ZNF559,ZNF559-ZNF177,ZNF560,ZNF561,ZNF562,ZNF699,ZNF812,ZNF846 chr19:7371001-10228223 19p13.2 cnaPANCAN7 loss 3.447735 19 11166176 11178844 SMARCA4 1 FRA19B 0 1 1 SMARCA4 chr19:11166176-11178844 SMARCA4 19p13.2 cnaPANCAN8 loss 2.842838 19 21714129 21721990 1 0 0 1 ZNF429 chr19:21714129-21721990 19p12 cnaPANCAN9 loss 15.436249 19 21934137 21937046 1 0 0 1 ZNF100 chr19:21934137-21937046 19p12 cnaPANCAN10 loss 2.065733 19 42613698 43085352 CIC 16 FRA19A 1 0 1 AC006486.9,CEACAM1,CEACAM8,CIC,CNFN,CXCL17,DEDD2,ERF,GSK3A,LIPE,MEGF8,PAFAH1B3,POU2F2,PRR19,TMEM145,ZNF526 chr19:42613698-43085352 CIC 19q13.2 cnaPANCAN11 loss 3.352421 19 46539806 46543754 1 FRA19A 1 0 1 IGFL4 chr19:46539806-46543754 19q13.32 cnaPANCAN12 loss 2.330979 19 46876579 46879659 1 FRA19A 1 0 1 PPP5C chr19:46876579-46879659 19q13.32 cnaPANCAN13 loss 51.050488 19 48737578 48738153 2 FRA19A 1 0 1 CARD8,ZNF114 chr19:48737578-48738153 19q13.33 cnaPANCAN14 loss 1.642358 19 48947819 48953225 2 FRA19A 1 0 1 GRIN2D,GRWD1 chr19:48947819-48953225 19q13.33 cnaPANCAN15 loss 1.523649 19 51583512 51599042 1 FRA19A 1 0 1 KLK14 chr19:51583512-51599042 19q13.41 cnaPANCAN16 loss 1.507749 19 55623201 55630332 1 FRA19A 1 0 1 PPP1R12C chr19:55623201-55630332 19q13.42 cnaPANCAN17 loss 3.064753 19 58480162 58484428 1 FRA19A 1 0 1 C19orf18 chr19:58480162-58484428 19q13.43 cnaPANCAN18 gain 1.471397 18 329586 14642350 64 0 0 1 ADCYAP1,AFG3L2,ANKRD12,ANKRD62,AP005482.1,APCDD1,ARHGAP28,C18orf42,C18orf56,C18orf64,CEP192,CEP76,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,FAM210A,GNAL,IMPA2,L3MBTL4,LAMA1,LDLRAD4,LPIN2,LRRC30,MC2R,MC5R,METTL4,MPPE1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,POTEC,PPP4R1,PSMG2,PTPN2,PTPRM,RAB12,RAB31,RALBP1,RNMT,SEH1L,SLMO1,SMCHD1,SOGA2,SPIRE1,TGIF1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,VAPA,YES1,ZBTB14,ZNF519 chr18:329586-14642350 18p11.32 cnaPANCAN19 gain 1.477709 18 18689747 25111583 29 0 0 1 ABHD3,ANKRD29,AQP4,C18orf8,CABLES1,CABYR,CHST9,CTAGE1,ESCO1,GATA6,GREB1L,HRH4,IMPACT,KCTD1,LAMA3,MIB1,NPC1,OSBPL1A,PSMA8,RBBP8,RIOK3,ROCK1,RP11-595B24.2,SNRPD1,SS18,TAF4B,TMEM241,TTC39C,ZNF521 chr18:18689747-25111583 18q11.1 cnaPANCAN20 loss 3.541766 18 329586 12608279 51 0 0 1 ADCYAP1,AFG3L2,ANKRD12,ANKRD62,APCDD1,ARHGAP28,C18orf42,C18orf56,C18orf64,CETN1,CHMP1B,CIDEA,CLUL1,COLEC12,DLGAP1,EMILIN2,ENOSF1,EPB41L3,GNAL,IMPA2,L3MBTL4,LAMA1,LPIN2,LRRC30,METTL4,MPPE1,MYL12A,MYL12B,MYOM1,NAPG,NDC80,NDUFV2,PIEZO2,PPP4R1,PTPRM,RAB12,RAB31,RALBP1,SLMO1,SMCHD1,SOGA2,SPIRE1,TGIF1,TMEM200C,TUBB6,TWSG1,TXNDC2,TYMS,VAPA,YES1,ZBTB14 chr18:329586-12608279 18p11.32 cnaPANCAN21 loss 1.944341 18 13736615 14660482 5 0 0 1 MC2R,MC5R,POTEC,RNMT,ZNF519 chr18:13736615-14660482 18p11.21 cnaPANCAN22 loss 1.521088 18 48351005 48352749 1 0 0 1 MRO chr18:48351005-48352749 18q21.2 cnaPANCAN23 loss 1.923574 18 48509092 48544565 3 0 0 1 ELAC1,RP11-729L2.2,SMAD4 chr18:48509092-48544565 SMAD4 18q21.2 cnaPANCAN24 loss 3.845746 18 55463193 55473708 1 FRA18B 1 0 1 ATP8B1 chr18:55463193-55473708 18q21.31 cnaPANCAN25 loss 1.925607 18 61648951 61654711 2 0 0 1 HMSD,SERPINB8 chr18:61648951-61654711 18q22.1 cnaPANCAN26 loss 1.600336 18 63025058 77109240 38 0 0 0 ATP9B,C18orf63,CBLN2,CCDC102B,CD226,CDH19,CDH7,CNDP1,CNDP2,CYB5A,DOK6,DSEL,FAM69C,FBXO15,GALR1,GTSCR1,LINC00908,MBP,NETO1,RP11-162A12.2,RP11-169F17.1,RP11-17M16.1,RP11-321M21.3,RP11-41O4.1,RP11-723G8.2,RP11-861L17.3,RP11-94B19.4,RTTN,SALL3,SMIM21,SOCS6,TIMM21,TMX3,TSHZ1,ZADH2,ZNF236,ZNF407,ZNF516 chr18:63025058-77109240 18q22.1 cnaPANCAN27 gain 2.713218 10 415240 18982605 GATA3 91 0 0 0 ACBD7,ADARB2,AKR1C1,AKR1C2,AKR1C3,AKR1C4,AKR1CL1,AKR1E2,ANKRD16,ARL5B,ASB13,ATP5C1,BEND7,C10orf111,C1QL3,CACNB2,CALML3,CALML5,CAMK1D,CCDC3,CDC123,CDNF,CELF2,CUBN,DCLRE1C,DHTKD1,DIP2C,ECHDC3,FAM107B,FAM171A1,FAM188A,FAM208B,FBXO18,FRMD4A,GATA3,GDI2,GTPBP4,HSPA14,IDI1,IDI2,IL15RA,IL2RA,ITGA8,ITIH2,ITIH5,KIN,KLF6,LARP4B,MCM10,MEIG1,MRC1,MRC1L1,NET1,NMT2,NSUN6,NUDT5,OLAH,OPTN,PFKFB3,PFKP,PHYH,PITRM1,PRKCQ,PROSER2,PRPF18,PRR26,PTER,PTPLA,RBM17,RP11-139J15.7,RP11-295P9.3,RPP38,RSU1,SEC61A2,SEPHS1,SFMBT2,SLC39A12,ST8SIA6,STAM,SUV39H2,TAF3,TMEM236,TMEM236,TRDMT1,TUBAL3,UCMA,UCN3,UPF2,USP6NL,VIM,WDR37 chr10:415240-18982605 GATA3,KLF6,LARP4B,VIM 10p15.3 cnaPANCAN28 gain 3.71101 10 26564966 39064000 44 0 0 1 ABI1,ACBD5,ANKRD26,ANKRD30A,APBB1IP,ARHGAP12,ARMC4,BAMBI,C10orf126,C10ORF68,CCDC7,CCNY,CREM,CUL2,EPC1,FZD8,GAD2,GJD4,ITGB1,KIAA1462,KIF5B,LYZL1,LYZL2,MAP3K8,MASTL,MKX,MPP7,MTPAP,MTRNR2L7,NAMPTL,NRP1,PARD3,PDSS1,PTCHD3,RAB18,SVIL,WAC,YME1L1,ZEB1,ZNF248,ZNF25,ZNF33A,ZNF37A,ZNF438 chr10:26564966-39064000 CUL2,EPC1 10p12.1 cnaPANCAN29 gain 2.036529 10 73431607 82606513 70 0 0 0 ADK,AGAP5,ANAPC16,ANXA11,ANXA7,AP3M1,ASCC1,C10orf105,C10orf11,C10orf54,C10orf55,CAMK2G,CDH23,CHCHD1,CHST3,COMTD1,DDIT4,DLG5,DNAJB12,DNAJC9,DUPD1,DUSP13,DYDC1,DYDC2,ECD,EIF5AL1,FAM149B1,FAM213A,FUT11,KAT6B,KCNMA1,MAT1A,MCU,MICU1,MRPS16,MSS51,MYOZ1,NDST2,NUDT13,NUTM2B,NUTM2E,OIT3,P4HA1,PLA2G12B,PLAC9,PLAU,POLR3A,PPIF,PPP3CB,PSAP,RP11-574K11.31,RPS24,SAMD8,SEC24C,SFTPA1,SFTPA2,SFTPD,SH2D4B,SPOCK2,SYNPO2L,TMEM254,TSPAN14,TTC18,USP54,VCL,VDAC2,ZCCHC24,ZMIZ1,ZNF503,ZSWIM8 chr10:73431607-82606513 KAT6B 10q22.1 cnaPANCAN30 loss 4.915882 10 415240 1908860 8 0 0 1 ADARB2,DIP2C,GTPBP4,IDI1,IDI2,LARP4B,PRR26,WDR37 chr10:415240-1908860 LARP4B 10p15.3 cnaPANCAN31 loss 3.684392 10 12591598 12597446 1 0 0 1 CAMK1D chr10:12591598-12597446 10p13 cnaPANCAN32 loss 1.783783 10 16800073 16806890 1 0 0 1 RSU1 chr10:16800073-16806890 10p13 cnaPANCAN33 loss 2.202546 10 23248958 23254787 1 0 0 1 ARMC3 chr10:23248958-23254787 10p12.2 cnaPANCAN34 loss 7.101045 10 26310948 26313081 1 0 0 1 MYO3A chr10:26310948-26313081 10p12.1 cnaPANCAN35 loss 1.641715 10 34471447 39064000 13 0 0 1 ANKRD30A,CCNY,CREM,CUL2,FZD8,GJD4,MTRNR2L7,NAMPTL,PARD3,ZNF248,ZNF25,ZNF33A,ZNF37A chr10:34471447-39064000 CUL2 10p11.21 cnaPANCAN36 loss 8.051755 10 43605171 43615502 RET 1 FRA10G 1 0 1 RET chr10:43605171-43615502 RET 10q11.21 cnaPANCAN37 loss 3.342323 10 49787796 49793411 1 FRA10G 1 0 1 ARHGAP22 chr10:49787796-49793411 10q11.22 cnaPANCAN38 loss 2.675406 10 50730543 50734400 3 FRA10G 1 0 1 ERCC6,ERCC6-PGBD3,PGBD3 chr10:50730543-50734400 10q11.23 cnaPANCAN39 loss 144.578801 10 50871048 50873252 1 FRA10G 1 0 1 CHAT chr10:50871048-50873252 10q11.23 cnaPANCAN40 loss 4.319835 10 53196243 53419759 1 FRA10C 1 0 1 PRKG1 chr10:53196243-53419759 10q21.1 cnaPANCAN41 loss 3.681805 10 58106383 58148879 1 FRA10C 1 0 1 ZWINT chr10:58106383-58148879 10q21.1 cnaPANCAN42 loss 16.210474 10 61958110 61959883 1 FRA10C 1 0 1 ANK3 chr10:61958110-61959883 ANK3 10q21.2 cnaPANCAN43 loss 1.512647 10 73826364 73837514 1 FRA10D 1 0 1 SPOCK2 chr10:73826364-73837514 10q22.1 cnaPANCAN44 loss 1.756146 10 87917446 94266244 BMPR1A,FAS,PTEN 50 0 0 0 ACTA2,ADIRF,ANKRD1,ANKRD22,ATAD1,BMPR1A,BTAF1,CH25H,CPEB3,FAM25A,FAM35A,FAS,FGFBP3,GLUD1,GRID1,HECTD2,HTR7,IDE,IFIT1,IFIT1B,IFIT2,IFIT3,IFIT5,KIF20B,KLLN,LDB3,LIPA,LIPF,LIPJ,LIPK,LIPM,LIPN,MARCH5,MINPP1,MMRN2,NUTM2A,NUTM2D,OPN4,PANK1,PAPSS2,PCGF5,PPP1R3C,PTEN,RNLS,RPP30,SLC16A12,SNCG,STAMBPL1,TNKS2,WAPAL chr10:87917446-94266244 BMPR1A,FAS,PTEN 10q23.2 cnaPANCAN45 loss 3.970849 10 95405434 95407142 1 FRA10AC1 0 1 1 PDE6C chr10:95405434-95407142 10q23.33 cnaPANCAN46 loss 2.436848 10 98771011 98775053 2 0 0 1 ARHGAP19-SLIT1,SLIT1 chr10:98771011-98775053 10q24.1 cnaPANCAN47 loss 7.782374 10 100013636 100017452 1 FRA10A 0 1 1 LOXL4 chr10:100013636-100017452 10q24.2 cnaPANCAN48 loss 2.056828 10 101155737 101157489 1 FRA10A 0 1 1 GOT1 chr10:101155737-101157489 10q24.2 cnaPANCAN49 loss 20.989893 10 114059358 114065712 1 FRA10B 0 1 1 TECTB chr10:114059358-114065712 10q25.2 cnaPANCAN50 loss 3.097478 10 114572158 114581916 1 FRA10B 0 1 1 VTI1A chr10:114572158-114581916 10q25.2 cnaPANCAN51 loss 2.876328 10 117883889 117890787 1 0 0 1 GFRA1 chr10:117883889-117890787 10q25.3 cnaPANCAN52 loss 1.84914 10 129863972 129865565 1 0 0 1 PTPRE chr10:129863972-129865565 10q26.2 cnaPANCAN53 loss 4.727048 10 134014530 134026235 2 0 0 1 DPYSL4,STK32C chr10:134014530-134026235 10q26.3 cnaPANCAN54 loss 2.486543 10 135010697 135079825 4 0 0 1 ADAM8,KNDC1,UTF1,VENTX chr10:135010697-135079825 10q26.3 cnaPANCAN55 loss 2.872376 10 135190394 135200568 1 0 0 1 PAOX chr10:135190394-135200568 10q26.3 cnaPANCAN56 gain 59.300694 11 2146903 2243013 4 0 0 1 IGF2,INS,INS-IGF2,TH chr11:2146903-2243013 11p15.5 cnaPANCAN57 gain 1.499701 11 34435361 36168640 11 FRA11E 1 0 1 APIP,CAT,CD44,EHF,ELF5,FJX1,LDLRAD3,PAMR1,PDHX,SLC1A2,TRIM44 chr11:34435361-36168640 CAT 11p13 cnaPANCAN58 gain 1.654394 11 67101782 67205052 8 FRA11H 1 0 1 CARNS1,CLCF1,POLD4,PPP1CA,PTPRCAP,RAD9A,RPS6KB2,TBC1D10C chr11:67101782-67205052 11q13.2 cnaPANCAN59 gain 6.174123 11 68363609 71461583 27 FRA11H 1 0 0 ANO1,CCND1,CPT1A,CTTN,DHCR7,FADD,FGF19,FGF3,FGF4,GAL,IGHMBP2,KRTAP5-10,KRTAP5-11,KRTAP5-7,KRTAP5-8,KRTAP5-9,MRGPRD,MRGPRF,MRPL21,MTL5,MYEOV,NADSYN1,ORAOV1,PPFIA1,PPP6R3,SHANK2,TPCN2 chr11:68363609-71461583 CCND1,CTTN 11q13.2 cnaPANCAN60 gain 1.46213 11 75305855 79976049 32 0 0 0 AAMDC,ACER3,ALG8,AQP11,B3GNT6,C11orf30,CAPN5,CLNS1A,DGAT2,GAB2,GDPD4,INTS4,KCTD14,KCTD21,LRRC32,MAP6,MOGAT2,MYO7A,NARS2,NDUFC2,NDUFC2-KCTD14,OMP,PAK1,PRKRIR,RP11-111M22.2,RSF1,TENM4,THRSP,TSKU,USP35,UVRAG,WNT11 chr11:75305855-79976049 11q13.5 cnaPANCAN61 gain 1.496312 11 85386638 86186186 9 0 0 1 C11orf73,CCDC81,CCDC83,CCDC89,CREBZF,EED,ME3,PICALM,SYTL2 chr11:85386638-86186186 11q14.1 cnaPANCAN62 loss 5.486789 11 466764 3074055 HRAS 68 0 0 1 AP006621.5,AP2A2,ASCL2,BRSK2,C11orf21,C11orf35,C11orf89,CARS,CD151,CD81,CDHR5,CDKN1C,CEND1,CHID1,CTSD,DEAF1,DRD4,DUSP8,EFCAB4A,EPS8L2,HRAS,IFITM10,IGF2,INS,INS-IGF2,IRF7,KCNQ1,KRTAP5-1,KRTAP5-2,KRTAP5-3,KRTAP5-4,KRTAP5-5,KRTAP5-6,LRRC56,LSP1,MOB2,MRPL23,MUC2,MUC5AC,MUC5B,MUC6,NAP1L4,PDDC1,PHLDA2,PHRF1,PIDD,PNPLA2,POLR2L,PTDSS2,RASSF7,RNH1,RP11-295K3.1,RPLP2,SCT,SLC22A18,SLC22A18AS,SLC25A22,SYT8,TALDO1,TH,TMEM80,TNNI2,TNNT3,TOLLIP,TRPM5,TSPAN32,TSPAN4,TSSC4 chr11:466764-3074055 HRAS,IRF7 11p15.5 cnaPANCAN63 loss 2.265338 11 4469289 4471469 1 0 0 1 OR52K2 chr11:4469289-4471469 11p15.4 cnaPANCAN64 loss 2.73346 11 5511942 5514334 2 0 0 1 HBE1,HBG2 chr11:5511942-5514334 11p15.4 cnaPANCAN65 loss 3.421237 11 5517586 5518567 2 0 0 1 HBE1,HBG2 chr11:5517586-5518567 11p15.4 cnaPANCAN66 loss 3.8782 11 7502714 7506956 1 0 0 1 OLFML1 chr11:7502714-7506956 11p15.4 cnaPANCAN67 loss 2.008847 11 9870401 9872248 1 0 0 1 SBF2 chr11:9870401-9872248 11p15.4 cnaPANCAN68 loss 7.904725 11 16631517 16642065 2 FRA11C 1 0 1 C11orf58,SOX6 chr11:16631517-16642065 11p15.1 cnaPANCAN69 loss 5.861926 11 17408731 17410893 1 FRA11C 1 0 1 KCNJ11 chr11:17408731-17410893 11p15.1 cnaPANCAN70 loss 3.74031 11 35551501 35553005 1 FRA11E 1 0 1 PAMR1 chr11:35551501-35553005 11p13 cnaPANCAN71 loss 1.410364 11 38032096 50053313 EXT2 69 0 0 1 ACCS,ACCSL,ACP2,AGBL2,ALKBH3,ALX4,AMBRA1,API5,ARFGAP2,ARHGAP1,ATG13,C11orf49,C11orf94,C11orf96,C1QTNF4,CD82,CELF1,CHRM4,CHST1,CKAP5,CREB3L1,CRY2,CTD-2210P24.4,DGKZ,EXT2,F2,FAM180B,FNBP4,FOLH1,GYLTL1B,HARBI1,HSD17B12,KBTBD4,LRP4,LRRC4C,MADD,MAPK8IP1,MDK,MTCH2,MYBPC3,NDUFS3,NR1H3,NUP160,OR4A47,OR4B1,OR4C12,OR4C13,OR4C3,OR4C5,OR4S1,OR4X1,OR4X2,PACSIN3,PEX16,PHF21A,PRDM11,PSMC3,PTPMT1,PTPRJ,RAPSN,SLC35C1,SLC39A13,SPI1,SYT13,TP53I11,TRIM64C,TSPAN18,TTC17,ZNF408 chr11:38032096-50053313 EXT2 11p12 cnaPANCAN72 loss 6.033199 11 61911382 61916668 1 0 0 1 INCENP chr11:61911382-61916668 11q12.3 cnaPANCAN73 loss 3.897289 11 68824028 68830224 1 FRA11A 0 1 1 TPCN2 chr11:68824028-68830224 11q13.3 cnaPANCAN74 loss 2.213201 11 78521606 78531289 1 0 0 1 TENM4 chr11:78521606-78531289 11q14.1 cnaPANCAN75 loss 2.028979 11 85382353 99832023 55 0 0 1 AMOTL1,ANKRD49,C11orf54,C11orf73,CCDC67,CCDC81,CCDC82,CCDC83,CCDC89,CEP57,CHORDC1,CNTN5,CREBZF,CTSC,CWC15,EED,ENDOD1,FAM76B,FAT3,FOLR4,FUT4,FZD4,GPR83,GRM5,HEPHL1,JRKL,KDM4D,KDM4E,KIAA1731,MAML2,ME3,MED17,MRE11A,MTMR2,MTNR1B,NAALAD2,NOX4,PANX1,PICALM,PIWIL4,PRSS23,RAB38,SESN3,SLC36A4,SMCO4,SYTL2,TAF1D,TMEM135,TRIM49,TRIM49C,TRIM49D1,TRIM64B,TRIM77,TYR,VSTM5 chr11:85382353-99832023 MED17 11q14.1 cnaPANCAN76 loss 2.876622 11 100222555 100227422 1 0 0 1 CNTN5 chr11:100222555-100227422 11q22.1 cnaPANCAN77 loss 6.201841 11 104923479 104933964 2 0 0 1 CARD16,CASP1 chr11:104923479-104933964 CASP1 11q22.3 cnaPANCAN78 loss 4.789998 11 104937107 104938244 2 0 0 1 CARD16,CASP1 chr11:104937107-104938244 CASP1 11q22.3 cnaPANCAN79 loss 1.459441 11 106614507 106624887 1 0 0 1 GUCY1A2 chr11:106614507-106624887 11q22.3 cnaPANCAN80 loss 2.345783 11 109787241 114117612 SDHD 46 0 0 1 ALG9,ALG9,ANKK1,AP002884.3,ARHGAP20,BCO2,BTG4,C11orf1,C11orf52,C11orf53,C11orf57,C11orf88,CLDN25,COLCA1,COLCA2,CRYAB,DIXDC1,DLAT,DRD2,FDX1,FDXACB1,HSPB2,HSPB2-C11orf52,HTR3A,HTR3B,IL18,LAYN,NCAM1,PIH1D2,PLET1,POU2AF1,PPP2R1B,PTS,RDX,RP11-794P6.2,SDHD,SDHD,SIK2,TEX12,TIMM8B,TMPRSS5,TTC12,USP28,ZBTB16,ZC3H12C,ZW10 chr11:109787241-114117612 SDHD 11q22.3 cnaPANCAN81 loss 2.128968 11 124743590 124748681 1 0 0 1 ROBO3 chr11:124743590-124748681 11q24.2 cnaPANCAN82 loss 2.668123 11 124947152 124956036 1 0 0 1 SLC37A2 chr11:124947152-124956036 11q24.2 cnaPANCAN83 gain 2.73574 8 11238599 12105762 17 0 0 1 BLK,C8orf12,C8orf49,CTSB,DEFB130,DEFB134,DEFB135,DEFB136,FAM167A,FAM86B1,FDFT1,GATA4,NEIL2,RP11-297N6.4,RP11-481A20.11,USP17L2,ZNF705D chr8:11238599-12105762 8p23.1 cnaPANCAN84 gain 1.945947 8 34291785 42933372 56 0 0 1 ADAM18,ADAM2,ADAM32,ADAM9,ADRB3,AGPAT6,ANK1,AP3M2,ASH2L,BAG4,BRF2,C8orf4,C8orf86,CHRNA6,CHRNB3,DDHD2,DKK4,EIF4EBP1,ERLIN2,FGFR1,FNTA,GINS4,GOLGA7,GOT1L1,GPR124,HOOK3,HTRA4,IDO1,IDO2,IKBKB,KAT6A,KCNU1,LETM2,LSM1,NKX6-3,PLAT,PLEKHA2,POLB,PPAPDC1B,PROSC,RAB11FIP1,RNF170,RP11-598P20.5,RP11-863K10.7,SFRP1,SLC20A2,SMIM19,STAR,TACC1,THAP1,TM2D2,UNC5D,VDAC3,WHSC1L1,ZMAT4,ZNF703 chr8:34291785-42933372 FGFR1,WHSC1L1 8p12 cnaPANCAN85 gain 1.685963 8 55021130 56207713 6 0 0 1 MRPL15,RP1,RP11-386G21.1,RP11-386G21.2,SOX17,XKR4 chr8:55021130-56207713 SOX17 8q11.23 cnaPANCAN86 gain 2.73351 8 79257747 82926337 20 0 0 1 CHMP4C,FABP12,FABP4,FABP5,FABP9,HEY1,IL7,IMPA1,MRPS28,PAG1,PKIA,PMP2,SLC10A5,SNX16,STMN2,TPD52,ZBTB10,ZC2HC1A,ZFAND1,ZNF704 chr8:79257747-82926337 8q21.12 cnaPANCAN87 gain 2.674745 8 95258812 95556451 4 FRA8B 1 0 1 FSBP,GEM,KIAA1429,RAD54B chr8:95258812-95556451 8q22.1 cnaPANCAN88 gain 2.531474 8 101260500 103876943 UBR5 16 0 0 1 ANKRD46,AZIN1,GRHL2,KB-1507C5.2,KB-1980E6.3,KLF10,NCALD,ODF1,PABPC1,RNF19A,RRM2B,SNX31,SPAG1,UBR5,YWHAZ,ZNF706 chr8:101260500-103876943 PABPC1,UBR5 8q22.2 cnaPANCAN89 gain 3.2183 8 115476276 118289246 RAD21 6 0 0 1 AARD,EIF3H,RAD21,SLC30A8,TRPS1,UTP23 chr8:115476276-118289246 RAD21 8q23.3 cnaPANCAN90 gain 9.257643 8 124927948 125431731 2 FRA8C 1 0 1 FER1L6,TMEM65 chr8:124927948-125431731 8q24.13 cnaPANCAN91 gain 2.253152 8 127610978 130096530 MYC 2 0 0 0 MYC,POU5F1B chr8:127610978-130096530 MYC 8q24.21 cnaPANCAN92 loss 1.407457 8 617667 7540999 26 0 0 0 AGPAT5,ANGPT2,ARHGEF10,CLN8,CSMD1,DEFA1,DEFA1B,DEFA3,DEFA4,DEFA5,DEFA6,DEFB1,DEFB103B,DEFB104B,DEFB105B,DEFB106B,DEFB107B,DEFB4B,DLGAP2,ERICH1,KBTBD11,MCPH1,MYOM2,PRR23D1,SPAG11B,ZNF705G chr8:617667-7540999 8p23.3 cnaPANCAN93 loss 4.713325 8 10388583 10390873 1 0 0 1 PRSS55 chr8:10388583-10390873 8p23.1 cnaPANCAN94 loss 4.235606 8 10550711 10553489 2 0 0 1 C8orf74,RP1L1 chr8:10550711-10553489 8p23.1 cnaPANCAN95 loss 1.722088 8 11162009 11165705 1 0 0 1 MTMR9 chr8:11162009-11165705 8p23.1 cnaPANCAN96 loss 2.447887 8 11617496 11623346 2 0 0 1 C8orf49,GATA4 chr8:11617496-11623346 8p23.1 cnaPANCAN97 loss 6.056619 8 22471938 22473808 1 0 0 1 CCAR2 chr8:22471938-22473808 8p21.3 cnaPANCAN98 loss 2.422062 8 28220844 28227238 2 0 0 1 FBXO16,ZNF395 chr8:28220844-28227238 8p21.1 cnaPANCAN99 loss 2.515763 8 47460945 61193179 44 0 0 0 ATP6V1H,C8orf22,CA8,CEBPD,CHCHD7,CYP7A1,EFCAB1,FAM110B,FAM150A,IMPAD1,LYN,LYPLA1,MCM4,MOS,MRPL15,NPBWR1,NSMAF,OPRK1,PCMTD1,PENK,PLAG1,PRKDC,PXDNL,RB1CC1,RGS20,RP1,RP11-386G21.1,RP11-386G21.2,RP11-738G5.2,RPS20,SDCBP,SDR16C5,SNAI2,SNTG1,SOX17,SPIDR,ST18,TCEA1,TGS1,TMEM68,TOX,UBE2V2,UBXN2B,XKR4 chr8:47460945-61193179 SOX17 8q11.1 cnaPANCAN100 loss 1.609616 8 75148999 75155716 1 0 0 1 JPH1 chr8:75148999-75155716 8q21.11 cnaPANCAN101 loss 8.174678 8 134083936 134084300 2 0 0 1 SLA,TG chr8:134083936-134084300 8q24.22 cnaPANCAN102 loss 1.53311 8 139143246 139144413 1 0 0 1 FAM135B chr8:139143246-139144413 8q24.23 cnaPANCAN103 loss 16.645143 8 140712356 140720647 1 FRA8D 1 0 1 KCNK9 chr8:140712356-140720647 8q24.3 cnaPANCAN104 loss 7.184299 8 144663491 144689685 3 FRA8D 1 0 1 EEF1D,PYCRL,TIGD5 chr8:144663491-144689685 8q24.3 cnaPANCAN105 gain 5.215152 16 653459 1005513 23 0 0 1 C16orf13,CCDC78,CHTF18,FAM173A,FAM195A,FBXL16,GNG13,HAGHL,JMJD8,LMF1,METRN,MSLN,MSLNL,NARFL,PRR25,RAB40C,RHBDL1,RHOT2,RPUSD1,STUB1,WDR24,WDR90,WFIKKN1 chr16:653459-1005513 16p13.3 cnaPANCAN106 gain 2.078343 16 8807383 8890101 3 0 0 1 ABAT,PMM2,TMEM186 chr16:8807383-8890101 16p13.2 cnaPANCAN107 gain 3.389593 16 29874277 31825615 80 0 0 1 AC002310.13,AHSP,ALDOA,ARMC5,ASPHD1,BCKDK,BCL7C,BOLA2B,C16orf58,C16orf92,C16orf93,C16orf98,CD2BP2,CDIPT,CORO1A,COX6A2,CTF1,DCTPP1,DOC2A,FAM57B,FBRS,FBXL19,FUS,GDPD3,HIRIP3,HSD3B7,INO80E,ITGAD,ITGAL,ITGAM,ITGAX,KAT8,KCTD13,MAPK3,MYLPF,ORAI3,PHKG2,PPP4C,PRR14,PRSS36,PRSS53,PRSS8,PYCARD,PYDC1,RNF40,RP11-196G11.1,RP11-347C12.1,RP11-347C12.3,SEPHS2,SEPT1,SETD1A,SEZ6L2,SLC5A2,SLX1A,SRCAP,STX1B,STX4,SULT1A3,TAOK2,TBC1D10B,TBX6,TGFB1I1,TMEM219,TRIM72,VKORC1,YPEL3,ZNF48,ZNF629,ZNF646,ZNF668,ZNF688,ZNF689,ZNF720,ZNF747,ZNF747,ZNF764,ZNF768,ZNF771,ZNF785,ZNF843 chr16:29874277-31825615 FUS,TAOK2 16p11.2 cnaPANCAN108 gain 10.878129 16 46507665 54369484 CYLD 37 0 0 1 ABCC11,ABCC12,ADCY7,AKTIP,BRD7,C16orf78,C16orf87,C16orf97,CBLN1,CHD9,CNEP1R1,CYLD,DNAJA2,FTO,GPT2,HEATR3,IRX3,ITFG1,LONP2,MYLK3,N4BP1,NETO2,NKD1,NOD2,ORC6,PAPD5,PHKB,RBL2,RP11-324D17.1,RPGRIP1L,SALL1,SHCBP1,SIAH1,SNX20,TOX3,VPS35,ZNF423 chr16:46507665-54369484 CHD9,CYLD 16q11.2 cnaPANCAN109 gain 2.478378 16 54567302 55881172 8 0 0 1 CAPNS2,CES1,CES5A,IRX5,IRX6,LPCAT2,MMP2,SLC6A2 chr16:54567302-55881172 MMP2 16q12.2 cnaPANCAN110 loss 3.544165 16 694880 722009 3 0 0 1 FAM195A,RHOT2,WDR90 chr16:694880-722009 16p13.3 cnaPANCAN111 loss 3.976035 16 2323849 2329529 1 0 0 1 ABCA3 chr16:2323849-2329529 16p13.3 cnaPANCAN112 loss 1.865035 16 3361775 3969292 CREBBP 14 0 0 1 C16orf90,CLUAP1,CREBBP,DNASE1,MTRNR2L4,NAA60,NAA60,OR2C1,SLX4,TRAP1,ZNF174,ZNF597,ZNF75A,ZSCAN32 chr16:3361775-3969292 CREBBP 16p13.3 cnaPANCAN113 loss 2.869845 16 6484016 6882536 1 0 0 1 RBFOX1 chr16:6484016-6882536 16p13.3 cnaPANCAN114 loss 4.390153 16 11009720 11017238 1 0 0 1 CIITA chr16:11009720-11017238 CIITA 16p13.13 cnaPANCAN115 loss 11.412858 16 12655542 12663401 1 0 0 1 SNX29 chr16:12655542-12663401 16p13.12 cnaPANCAN116 loss 4.342437 16 48326310 48337281 1 0 0 1 LONP2 chr16:48326310-48337281 16q12.1 cnaPANCAN117 loss 2.228578 16 48488696 61699095 CYLD 89 0 0 1 ADCY7,AKTIP,AMFR,ARL2BP,BBS2,BRD7,C16orf78,C16orf80,C16orf97,CAPNS2,CBLN1,CCDC102A,CCDC113,CCDC135,CCL17,CCL22,CDH8,CES1,CES5A,CETP,CHD9,CIAPIN1,CNEP1R1,CNGB1,CNOT1,COQ9,CPNE2,CSNK2A2,CTD-2600O9.1,CX3CL1,CYLD,DOK4,FAM192A,FTO,GINS3,GNAO1,GOT2,GPR114,GPR56,GPR97,HEATR3,HERPUD1,IRX3,IRX5,IRX6,KATNB1,KIFC3,LPCAT2,MMP15,MMP2,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1M,MT1X,MT2A,MT3,MT4,N4BP1,NDRG4,NKD1,NLRC5,NOD2,NUDT21,NUP93,OGFOD1,PAPD5,PLLP,POLR2C,PRSS54,RBL2,RP11-105C20.2,RP11-324D17.1,RPGRIP1L,RSPRY1,SALL1,SETD6,SLC12A3,SLC38A7,SLC6A2,SNX20,TEPP,TOX3,USB1,ZNF319,ZNF423 chr16:48488696-61699095 CHD9,CNOT1,CYLD,MMP2,NUP93 16q12.1 cnaPANCAN118 loss 2.049634 16 71022266 73829037 22 0 0 1 AC010547.9,AP1G1,ATXN1L,C16orf47,CALB2,CHST4,CMTR2,DHODH,DHX38,HP,HPR,HYDIN,IST1,MARVELD3,PHLPP2,PMFBP1,TAT,TXNL4B,ZFHX3,ZNF19,ZNF23,ZNF821 chr16:71022266-73829037 ZFHX3 16q22.2 cnaPANCAN119 loss 6.948167 16 74907367 74909625 1 0 0 1 WDR59 chr16:74907367-74909625 16q23.1 cnaPANCAN120 loss 7.175338 16 76973584 89379936 88 0 0 0 ACSF3,ADAD2,ADAMTS18,ANKRD11,APRT,ATMIN,ATP2C2,BANP,BCMO1,C16orf46,C16orf74,C16orf95,CA5A,CBFA2T3,CDH13,CDH15,CDT1,CDYL2,CENPN,CLEC3A,CMC2,CMIP,COTL1,COX4I1,CRISPLD2,CTC-786C10.1,CTU2,CYBA,DNAAF1,DYNLRB2,EMC8,FBXO31,FOXC2,FOXF1,FOXL1,GALNS,GAN,GCSH,GINS2,GSE1,HSBP1,HSD17B2,HSDL1,IL17C,IRF8,JPH3,KCNG4,KIAA0513,KLHDC4,KLHL36,MAF,MAP1LC3B,MBTPS1,MLYCD,MON1B,MPHOSPH6,MTHFSD,MVD,NECAB2,NUDT7,OSGIN1,PABPN1L,PIEZO1,PLCG2,RNF166,RP11-178L8.4,RP11-505K9.4,RP11-680G10.1,RP11-830F9.6,SDR42E1,SLC22A31,SLC38A8,SLC7A5,SNAI3,SYCE1L,TAF1C,TLDC1,TRAPPC2L,USP10,VAT1L,WFDC1,WWOX,ZC3H18,ZCCHC14,ZDHHC7,ZFPM1,ZNF469,ZNF778 chr16:76973584-89379936 16q23.1 cnaPANCAN121 gain 2.34324 7 705284 15661900 CARD11,PMS2,RAC1 88 0 0 1 AC074389.6,AC091801.1,AC110781.3,ACTB,ADAP1,AGMO,AIMP2,AMZ1,ANKRD61,AP5Z1,ARL4A,BRAT1,C1GALT1,C7orf26,C7orf50,CARD11,CCZ1,CCZ1B,CHST12,COL28A1,COX19,CYP2W1,CYTH3,DAGLB,DGKB,EIF2AK1,EIF3B,ELFN1,ETV1,FAM220A,FBXL18,FOXK1,FSCN1,FTSJ2,GET4,GLCCI1,GNA12,GPER1,GPR146,GRID2IP,HEATR2,ICA1,INTS1,IQCE,KDELR2,LFNG,MAD1L1,MAFK,MEOX2,MICALL2,MIOS,MMD2,NDUFA4,NUDT1,NXPH1,OCM,PAPOLB,PHF14,PMS2,PRKAR1B,PSMG3,RAC1,RADIL,RBAK,RBAK-RBAKDN,RNF216,RPA3,RPA3-AS1,RSPH10B,RSPH10B2,SCIN,SDK1,SLC29A4,SNX8,SUN1,THSD7A,TMEM106B,TMEM184A,TNRC18,TTYH3,UNCX,USP42,VWDE,WIPI2,ZDHHC4,ZFAND2A,ZNF12,ZNF853 chr7:705284-15661900 ACTB,CARD11,PMS2,RAC1 7p22.3 cnaPANCAN122 gain 3.638044 7 16811665 23157774 24 0 0 1 ABCB5,AGR2,AGR3,AHR,CDCA7L,DNAH11,FAM126A,FERD3L,HDAC9,IL6,ITGB8,KLHL7,MACC1,PRPS1L1,RAPGEF5,SNX13,SP4,SP8,STEAP1B,TMEM196,TOMM7,TSPAN13,TWIST1,TWISTNB chr7:16811665-23157774 AHR,HDAC9 7p21.1 cnaPANCAN123 gain 5.510598 7 33002527 33036530 2 0 0 1 AVL9,FKBP9 chr7:33002527-33036530 7p14.3 cnaPANCAN124 gain 16.488863 7 52476751 57930455 EGFR 19 0 0 0 CCT6A,CHCHD2,EGFR,GBAS,LANCL2,MRPS17,MRPS17,NUPR1L,PHKG1,POM121L12,PSPH,SEC61G,SEPT14,SUMF2,VOPP1,VSTM2A,ZNF479,ZNF713,ZNF716 chr7:52476751-57930455 EGFR 7p12.1 cnaPANCAN125 gain 10.796496 7 63112265 64847086 9 FRA7J 1 0 0 ERV3-1,ZNF107,ZNF117,ZNF138,ZNF273,ZNF679,ZNF680,ZNF736,ZNF92 chr7:63112265-64847086 7q11.21 cnaPANCAN126 gain 1.635822 7 75453130 75589135 2 FRA7J 1 0 1 POR,RHBDD2 chr7:75453130-75589135 7q11.23 cnaPANCAN127 gain 11.607066 7 89940551 94578831 30 0 0 1 AKAP9,ANKIB1,BET1,CALCR,CASD1,CCDC132,CDK14,CDK6,CLDN12,COL1A2,CYP51A1,ERVW-1,FAM133B,FZD1,GATAD1,GNG11,GNGT1,GTPBP10,HEPACAM2,KRIT1,LRRD1,MTERF,PEG10,PEX1,PPP1R9A,RBM48,SAMD9,SAMD9L,SGCE,TFPI2 chr7:89940551-94578831 AKAP9 7q21.13 cnaPANCAN128 gain 1.876316 7 99530544 99811360 15 FRA7F 1 0 1 AP4M1,AZGP1,C7orf43,CNPY4,COPS6,GAL3ST4,GPC2,LAMTOR4,MBLAC1,MCM7,STAG3,TAF6,ZKSCAN1,ZNF3,ZSCAN21 chr7:99530544-99811360 7q22.1 cnaPANCAN129 gain 8.148325 7 111064230 123536458 MET 47 0 0 0 AASS,AC106873.4,ANKRD7,ASB15,ASZ1,C7orf60,CADPS2,CAPZA2,CAV1,CAV2,CFTR,CPED1,CTTNBP2,DOCK4,FAM3C,FEZF1,FOXP2,GPR85,HYAL4,IFRD1,IMMP2L,ING3,IQUB,KCND2,LINC00998,LMOD2,LSMEM1,MDFIC,MET,NAA38,NDUFA5,PPP1R3A,PTPRZ1,RNF133,RNF148,SLC13A1,ST7,ST7-OT4,TAS2R16,TES,TFEC,TMEM168,TSPAN12,WASL,WNT16,WNT2,ZNF277 chr7:111064230-123536458 MET 7q31.1 cnaPANCAN130 gain 1.343288 7 148916152 158385118 74 FRA7I 1 0 1 ABCB8,ABCF2,AC005481.5,AC008060.7,AC009403.2,AC021218.2,AC099552.4,ACTR3B,ACTR3C,AGAP3,AOC1,ASB10,ASIC3,ATG9B,ATP6V0E2,BLACE,C7orf13,CDK5,CHPF2,CNPY1,CRYGN,DNAJB6,DPP6,EN2,FASTK,GALNT11,GALNTL5,GBX1,GIMAP1,GIMAP2,GIMAP4,GIMAP5,GIMAP6,GIMAP7,GIMAP8,HTR5A,HTR5A-AS1,INSIG1,KCNH2,KMT2C,KRBA1,LMBR1,LRRC61,MNX1,NOM1,NOS3,NUB1,PAXIP1,PAXIP1-AS2,PRKAG2,PTPRN2,RARRES2,RBM33,REPIN1,RHEB,RNF32,SHH,SLC4A2,SMARCD3,TMEM176A,TMEM176B,TMUB1,UBE3C,WDR86,XRCC2,ZBED6CL,ZNF212,ZNF282,ZNF467,ZNF746,ZNF775,ZNF777,ZNF783,ZNF862 chr7:148916152-158385118 RHEB 7q36.1 cnaPANCAN131 loss 1.928963 7 871978 877921 1 FRA7B 1 0 1 SUN1 chr7:871978-877921 7p22.3 cnaPANCAN132 loss 70.14251 7 42266969 42268947 1 0 0 1 GLI3 chr7:42266969-42268947 7p14.1 cnaPANCAN133 loss 1.43088 7 50688093 50694887 1 0 0 1 GRB10 chr7:50688093-50694887 7p12.1 cnaPANCAN134 loss 5.423702 7 105889584 105895267 1 FRA7F 1 0 1 NAMPT chr7:105889584-105895267 7q22.3 cnaPANCAN135 loss 2.387245 7 110740223 110743218 2 0 0 1 IMMP2L,LRRN3 chr7:110740223-110743218 7q31.1 cnaPANCAN136 loss 7.682723 7 117829640 117833234 1 0 0 1 NAA38 chr7:117829640-117833234 7q31.31 cnaPANCAN137 loss 2.528123 7 118126434 127688793 POT1 32 0 0 1 AASS,ARF5,ASB15,CADPS2,CPED1,FAM3C,FEZF1,FSCN3,GCC1,GPR37,GRM8,HYAL4,ING3,IQUB,KCND2,LMOD2,LRRC4,NDUFA5,PAX4,POT1,PTPRZ1,RNF133,RNF148,SLC13A1,SND1,SPAM1,TAS2R16,TMEM229A,TSPAN12,WASL,WNT16,ZNF800 chr7:118126434-127688793 POT1 7q31.31 cnaPANCAN138 loss 3.550647 7 129690673 129699117 1 0 0 1 ZC3HC1 chr7:129690673-129699117 7q32.2 cnaPANCAN139 gain 1.556769 9 5725855 5788494 2 0 0 1 ERMP1,KIAA1432 chr9:5725855-5788494 9p24.1 cnaPANCAN140 gain 7.998927 9 35022992 36014506 FANCG 29 0 0 1 ARHGEF39,C9orf131,CA9,CCDC107,CD72,CREB3,FAM166B,FAM214B,FAM221B,FANCG,GBA2,HINT2,HRCT1,MSMP,NPR2,OR13J1,OR2S2,PIGO,RGP1,RUSC2,SIT1,SPAG8,STOML2,TESK1,TLN1,TMEM8B,TPM2,UNC13B,VCP chr9:35022992-36014506 FANCG 9p13.3 cnaPANCAN141 gain 1.436969 9 71039044 91010663 GNAQ 67 0 0 1 ABHD17B,AGTPBP1,ALDH1A1,ANXA1,APBA1,C9orf135,C9orf153,C9orf170,C9orf40,C9orf41,C9orf57,C9orf64,C9orf85,CDK20,CEP78,CTSL,DAPK1,FAM122A,FAM189A2,FOXB2,FRMD3,FXN,GAS1,GCNT1,GDA,GKAP1,GNA14,GNAQ,GOLM1,HNRNPK,IDNK,ISCA1,KIF27,KLF9,MAMDC2,NAA35,NMRK1,NTRK2,OSTF1,PCSK5,PGM5,PIP5K1B,PRKACG,PRUNE2,PSAT1,PTAR1,RASEF,RFK,RMI1,RORB,SLC28A3,SMC5,SPATA31D1,SPATA31E1,SPIN1,TJP2,TLE1,TLE4,TMC1,TMEM2,TMEM252,TRPM3,TRPM6,UBQLN1,VPS13A,ZCCHC6,ZFAND5 chr9:71039044-91010663 GNAQ,NTRK2,PCSK5,TJP2 9q21.11 cnaPANCAN142 gain 2.963135 9 116024598 116026161 2 FRA9B 0 1 1 CDC26,SLC31A1 chr9:116024598-116026161 9q32 cnaPANCAN143 gain 2.885028 9 139362176 140938752 NOTCH1 64 0 0 1 ABCA2,AGPAT2,ANAPC2,ARRDC1,C8G,C9orf139,C9orf141,C9orf142,C9orf163,C9orf169,C9orf37,CACNA1B,CCDC183,CLIC3,DPH7,DPP7,EDF1,EGFL7,EHMT1,ENTPD2,ENTPD8,EXD3,FAM166A,FAM69B,FBXW5,FUT7,GRIN1,LCN10,LCN12,LCN15,LCN6,LCN6,LCN8,LCNL1,LRRC26,MAMDC4,MAN1B1,MRPL41,NDOR1,NELFB,NOTCH1,NOXA1,NPDC1,NRARP,NSMF,PHPT1,PNPLA7,PTGDS,RABL6,RNF208,RP11-216L13.17,SAPCD2,SEC16A,SLC34A3,SSNA1,TMEM141,TMEM203,TMEM210,TOR4A,TPRN,TRAF2,TUBB4B,UAP1L1,ZMYND19 chr9:139362176-140938752 NOTCH1 9q34.3 cnaPANCAN144 loss 1.665058 9 789932 31512397 CDKN2A,JAK2 98 0 0 0 ACER2,ADAMTSL1,AK3,BNC2,C9orf53,C9orf72,C9orf92,CAAP1,CCDC171,CD274,CDC37L1,CDKN2A,CDKN2B,CER1,CNTLN,DENND4C,DMRT1,DMRT2,DMRT3,DMRTA1,ELAVL2,EQTN,ERMP1,FAM154A,FOCAD,FREM1,GLDC,GLIS3,HAUS6,IFNA1,IFNA10,IFNA13,IFNA14,IFNA16,IFNA17,IFNA2,IFNA21,IFNA4,IFNA5,IFNA6,IFNA7,IFNA8,IFNB1,IFNE,IFNK,IFNW1,IFT74,IL33,INSL4,INSL6,IZUMO3,JAK2,KCNV2,KDM4C,KIAA0020,KIAA1432,KIAA2026,KLHL9,LINGO2,LRRC19,LURAP1L,MLANA,MLLT3,MOB3B,MPDZ,MTAP,NFIB,PDCD1LG2,PLAA,PLGRKT,PLIN2,PPAPDC2,PSIP1,PTPLAD2,PTPRD,RANBP6,RCL1,RFX3,RLN1,RLN2,RP11-145E5.5,RPS6,RRAGA,SH3GL2,SLC1A1,SLC24A2,SMARCA2,SNAPC3,SPATA6L,TEK,TMEM261,TPD52L3,TTC39B,TUSC1,TYRP1,UHRF2,VLDLR,ZDHHC21 chr9:789932-31512397 BNC2,CDKN2A,JAK2,PSIP1 9p24.3 cnaPANCAN145 loss 1.359771 9 34565039 38747688 FANCG,PAX5 70 0 0 1 ALDH1B1,ANKRD18A,ANKRD18A,ARHGEF39,ARID3C,C9orf131,CA9,CCDC107,CCIN,CCL19,CCL21,CCL27,CD72,CLTA,CNTFR,CREB3,DCAF10,DCTN3,DNAJB5,EXOSC3,FAM166B,FAM205A,FAM214B,FAM221B,FANCG,FBXO10,FRMPD1,GALT,GALT,GBA2,GLIPR2,GNE,GRHPR,HINT2,HRCT1,IGFBPL1,IL11RA,KIAA1045,MELK,MSMP,NPR2,OR13J1,OR2S2,PAX5,PIGO,POLR1E,RECK,RGP1,RNF38,RP11-195F19.5,RP11-613M10.8,RP11-613M10.9,RPP25L,RUSC2,SHB,SIGMAR1,SIT1,SLC25A51,SPAG8,STOML2,TESK1,TLN1,TMEM8B,TOMM5,TPM2,TRMT10B,UNC13B,VCP,ZBTB5,ZCCHC7 chr9:34565039-38747688 FANCG,PAX5 9p13.3 cnaPANCAN146 loss 7.442469 9 71039044 91015500 GNAQ 67 0 0 0 ABHD17B,AGTPBP1,ALDH1A1,ANXA1,APBA1,C9orf135,C9orf153,C9orf170,C9orf40,C9orf41,C9orf57,C9orf64,C9orf85,CDK20,CEP78,CTSL,DAPK1,FAM122A,FAM189A2,FOXB2,FRMD3,FXN,GAS1,GCNT1,GDA,GKAP1,GNA14,GNAQ,GOLM1,HNRNPK,IDNK,ISCA1,KIF27,KLF9,MAMDC2,NAA35,NMRK1,NTRK2,OSTF1,PCSK5,PGM5,PIP5K1B,PRKACG,PRUNE2,PSAT1,PTAR1,RASEF,RFK,RMI1,RORB,SLC28A3,SMC5,SPATA31D1,SPATA31E1,SPIN1,TJP2,TLE1,TLE4,TMC1,TMEM2,TMEM252,TRPM3,TRPM6,UBQLN1,VPS13A,ZCCHC6,ZFAND5 chr9:71039044-91015500 GNAQ,NTRK2,PCSK5,TJP2 9q21.11 cnaPANCAN147 loss 1.601441 9 112560800 112565864 3 0 0 1 AKAP2,PALM2,PALM2-AKAP2 chr9:112560800-112565864 9q31.3 cnaPANCAN148 loss 1.331884 9 114332950 114335973 2 0 0 1 PTGR1,ZNF483 chr9:114332950-114335973 9q31.3 cnaPANCAN149 loss 3.752782 9 115169790 115171818 1 FRA9B 0 1 1 HSDL2 chr9:115169790-115171818 9q32 cnaPANCAN150 loss 3.695158 9 125154417 125154723 1 0 0 1 PTGS1 chr9:125154417-125154723 PTGS1 9q33.2 cnaPANCAN151 loss 4.445501 9 127648555 127654767 1 0 0 1 GOLGA1 chr9:127648555-127654767 9q33.3 cnaPANCAN152 loss 7.637957 9 132641852 132645732 1 0 0 1 USP20 chr9:132641852-132645732 9q34.11 cnaPANCAN153 loss 1.980492 9 133755697 133759480 ABL1 1 0 0 1 ABL1 chr9:133755697-133759480 ABL1 9q34.12 cnaPANCAN154 loss 13.734893 9 135594801 135601427 1 0 0 1 AK8 chr9:135594801-135601427 9q34.13 cnaPANCAN155 loss 1.368568 9 136079456 136085872 1 0 0 1 OBP2B chr9:136079456-136085872 9q34.2 cnaPANCAN156 loss 1.322078 9 136610053 136847850 1 0 0 1 VAV2 chr9:136610053-136847850 9q34.2 cnaPANCAN157 loss 9.176161 9 137641680 137643756 1 0 0 1 COL5A1 chr9:137641680-137643756 9q34.3 cnaPANCAN158 loss 8.414961 9 137720142 137733151 1 0 0 1 COL5A1 chr9:137720142-137733151 9q34.3 cnaPANCAN159 loss 4.445055 9 139270107 139271165 1 0 0 1 SNAPC4 chr9:139270107-139271165 9q34.3 cnaPANCAN160 loss 2.819998 9 139327337 139349187 2 0 0 1 INPP5E,SEC16A chr9:139327337-139349187 9q34.3 cnaPANCAN161 loss 7.136042 9 139373962 139621852 NOTCH1 5 0 0 1 AGPAT2,C9orf163,EGFL7,FAM69B,NOTCH1 chr9:139373962-139621852 NOTCH1 9q34.3 cnaPANCAN162 loss 2.593622 9 140113673 140938752 20 0 0 1 ARRDC1,C9orf169,C9orf37,CACNA1B,DPH7,EHMT1,ENTPD8,EXD3,FAM166A,MRPL41,NELFB,NOXA1,NRARP,NSMF,PNPLA7,RNF208,SLC34A3,TOR4A,TUBB4B,ZMYND19 chr9:140113673-140938752 9q34.3 cnaPANCAN163 gain 9.827409 12 889902 7799359 86 0 0 0 ACRBP,ACSM4,ADIPOR2,AKAP3,ANO2,ATN1,C12orf4,C12orf5,C12orf57,C1R,C1RL,C1S,CACNA1C,CACNA2D4,CCND2,CD163,CD163L1,CD27,CD4,CD9,CDCA3,CHD4,CLSTN3,COPS7A,DCP1B,DYRK4,EFCAB4B,EMG1,ENO2,ERC1,FBXL14,FGF23,FGF6,FKBP4,FOXM1,GALNT8,GAPDH,GNB3,GPR162,IFFO1,ING4,ITFG2,KCNA1,KCNA5,KCNA6,LAG3,LPAR5,LPCAT3,LRRC23,LRTM2,LTBR,MLF2,MRPL51,NCAPD2,NDUFA9,NOP2,NRIP2,NTF3,PARP11,PEX5,PHB2,PIANP,PLEKHG6,PRMT8,PTMS,PTPN6,RAD51AP1,RAD52,RBP5,RHNO1,RP11-234B24.6,RP11-500M8.7,SCNN1A,SPSB2,TAPBPL,TEAD4,TNFRSF1A,TPI1,TSPAN9,TULP3,USP5,VAMP1,VWF,WNK1,WNT5B,ZNF384 chr12:889902-7799359 CHD4,WNK1 12p13.33 cnaPANCAN164 gain 2.190611 12 18394482 33520316 KRAS 74 0 0 0 ABCC9,AEBP2,AMN1,ARNTL2,ASUN,BCAT1,BHLHE41,BICD1,C12orf39,C12orf71,C12orf77,C2CD5,CAPRIN2,CAPZA3,CASC1,CCDC91,CMAS,DDX11,DENND5B,DNM1L,ERGIC2,ETNK1,FAM60A,FAR2,FGD4,FGFR1OP2,GOLT1B,GYS2,H3F3C,IAPP,IFLTD1,IPO8,ITPR2,KCNJ8,KIAA1551,KLHL42,KRAS,LDHB,LRMP,LST3,LYRM5,MANSC4,MED21,METTL20,MRPS35,OVCH1,OVCH1-AS1,PDE3A,PIK3C2G,PKP2,PLCZ1,PLEKHA5,PPFIBP1,PTHLH,PYROXD1,RASSF8,RECQL,REP15,RERGL,RP11-125O5.2,SLCO1A2,SLCO1B1,SLCO1B3,SLCO1B7,SLCO1C1,SMCO2,SOX5,SSPN,ST8SIA1,STK38L,TM7SF3,TMTC1,TSPAN11,YARS2 chr12:18394482-33520316 KRAS 12p12.3 cnaPANCAN165 gain 3.46249 12 58029844 58600952 CDK4 14 0 0 1 AGAP2,AGAP2-AS1,AVIL,CDK4,CTDSP2,CYP27B1,MARCH9,METTL1,METTL21B,OS9,RP11-571M6.15,TSFM,TSPAN31,XRCC6BP1 chr12:58029844-58600952 CDK4 12q13.3 cnaPANCAN166 gain 1.70604 12 60752529 72151767 MDM2 60 0 0 0 AC025263.3,AVPR1A,BEST3,C12orf56,C12orf61,C12orf66,CAND1,CCT2,CNOT2,CPM,CPSF6,CTD-2021H9.3,DPY19L2,DYRK2,FAM19A2,FRS2,GNS,GRIP1,HELB,HMGA2,IFNG,IL22,IL26,IRAK3,KCNMB4,LEMD3,LGR5,LLPH,LRRC10,LYZ,MDM1,MDM2,MON2,MSRB3,MYRFL,NUP107,PPM1H,PTPRB,PTPRR,RAB21,RAB3IP,RAP1B,RASSF3,RP11-293I14.2,RP11-366L20.2,SLC35E3,SRGAP1,TBC1D30,TBK1,THAP2,TMBIM4,TMBIM4,TMEM19,TMEM5,TSPAN8,USP15,WIF1,XPOT,YEATS4,ZFC3H1 chr12:60752529-72151767 MDM2,NUP107,SRGAP1 12q14.1 cnaPANCAN167 loss 2.398915 12 3098426 3109757 1 0 0 1 TEAD4 chr12:3098426-3109757 12p13.33 cnaPANCAN168 loss 11.988545 12 9088989 9091120 1 0 0 1 PHC1 chr12:9088989-9091120 12p13.31 cnaPANCAN169 loss 2.308755 12 15069854 15071900 1 0 0 1 ERP27 chr12:15069854-15071900 12p12.3 cnaPANCAN170 loss 1.8309 12 46579520 46580130 1 FRA12A 0 1 1 SLC38A1 chr12:46579520-46580130 12q13.11 cnaPANCAN171 loss 20.111556 12 101602872 101606763 1 0 0 1 SLC5A8 chr12:101602872-101606763 12q23.2 cnaPANCAN172 loss 8.437249 12 107057976 107060523 2 0 0 1 RFX4,RP11-144F15.1 chr12:107057976-107060523 12q23.3 cnaPANCAN173 loss 8.196051 12 126126875 126131676 1 FRA12E 1 0 1 TMEM132B chr12:126126875-126131676 12q24.32 cnaPANCAN174 loss 2.821509 12 126145202 126146287 1 FRA12E 1 0 1 TMEM132B chr12:126145202-126146287 12q24.32 cnaPANCAN175 loss 2.231828 12 128191985 133161346 19 FRA12E 1 0 1 DDX51,EP400NL,FBRSL1,FZD10,GALNT9,GLT1D1,GPR133,MMP17,NOC4L,PIWIL1,PUS1,RAN,RIMBP2,SFSWAP,SLC15A4,STX2,TMEM132C,TMEM132D,ULK1 chr12:128191985-133161346 12q24.32 cnaPANCAN176 gain 2.845344 5 914233 26062208 TERT 54 0 0 0 ADAMTS16,ADCY2,ANKH,ANKRD33B,BASP1,C5orf17,C5orf38,C5orf49,CCT5,CDH10,CDH12,CDH18,CLPTM1L,CMBL,CTNND2,DAP,DNAH5,FAM105A,FAM105B,FAM134B,FAM173B,FASTKD3,FBXL7,IRX1,IRX2,IRX4,KIAA0947,LPCAT1,MARCH11,MARCH6,MED10,MRPL36,MTRR,MYO10,NDUFS6,NKD2,NSUN2,PAPD7,PRDM9,ROPN1L,RP11-1C1.5,RP11-661C8.3,SEMA5A,SLC12A7,SLC6A18,SLC6A19,SLC6A3,SRD5A1,TAS2R1,TERT,TRIO,TRIP13,UBE2QL1,ZNF622 chr5:914233-26062208 CCT5,TERT,TRIO 5p15.33 cnaPANCAN177 gain 2.286409 5 29049016 45378456 IL7R 72 0 0 1 ADAMTS12,AGXT2,AMACR,ANXA2R,BRIX1,C1QTNF3,C5orf22,C5orf28,C5orf34,C5orf42,C5orf51,C6,C7,C9,CAPSL,CARD6,CCDC152,CCL28,CDH6,DAB2,DNAJC21,DROSHA,EGFLAM,FBXO4,FGF10,FYB,GDNF,GHR,GOLPH3,HCN1,HMGCS1,IL7R,LIFR,LMBRD2,MROH2B,MRPS30,MTMR12,NADK2,NIM1K,NIPBL,NNT,NPR3,NUP155,OSMR,OXCT1,PAIP1,PDZD2,PLCXD3,PRKAA1,PRLR,PTGER4,RAD1,RAI14,RANBP3L,RICTOR,RP11-1084J3.4,RPL37,RXFP3,SEPP1,SKP2,SLC1A3,SLC45A2,SPEF2,SUB1,TARS,TTC23L,TTC33,UGT3A1,UGT3A2,WDR70,ZFR,ZNF131 chr5:29049016-45378456 IL7R 5p13.3 cnaPANCAN178 gain 2.710521 5 97914702 100113382 3 0 0 0 CHD1,FAM174A,RGMB chr5:97914702-100113382 5q15 cnaPANCAN179 loss 1.493573 5 55244488 55469170 2 0 0 1 ANKRD55,IL6ST chr5:55244488-55469170 5q11.2 cnaPANCAN180 loss 1.603727 5 56253756 56255977 1 0 0 1 MIER3 chr5:56253756-56255977 5q11.2 cnaPANCAN181 loss 2.75005 5 59033236 59745233 1 0 0 1 PDE4D chr5:59033236-59745233 5q12.1 cnaPANCAN182 loss 2.362342 5 73161310 73162067 1 0 0 1 ARHGEF28 chr5:73161310-73162067 5q13.2 cnaPANCAN183 loss 2.746617 5 75967431 75968583 1 0 0 1 IQGAP2 chr5:75967431-75968583 5q13.3 cnaPANCAN184 loss 2.741312 5 99023205 114756546 APC 37 0 0 0 AC011366.3,APC,C5orf30,CAMK4,CCDC112,CTC-487M23.8,CTC-554D6.1,DCP2,EFNA5,EPB41L4A,FAM174A,FBXL17,FER,GIN1,KCNN2,MAN2A1,MCC,NREP,NUDT12,PAM,PGGT1B,PJA2,PPIP5K2,REEP5,SLC25A46,SLCO4C1,SLCO6A1,SRP19,ST8SIA4,STARD4,TMEM232,TRIM36,TSLP,TSSK1B,WDR36,YTHDC2,ZRSR1 chr5:99023205-114756546 APC 5q21.1 cnaPANCAN185 loss 7.99219 5 130954988 130955412 2 FRA5C 1 0 1 CTC-432M15.3,RAPGEF6 chr5:130954988-130955412 5q31.1 cnaPANCAN186 loss 5.539135 5 140870417 140872149 21 0 0 1 PCDHGA1,PCDHGA10,PCDHGA11,PCDHGA12,PCDHGA2,PCDHGA3,PCDHGA4,PCDHGA5,PCDHGA6,PCDHGA7,PCDHGA8,PCDHGA9,PCDHGB1,PCDHGB2,PCDHGB3,PCDHGB4,PCDHGB6,PCDHGB7,PCDHGC3,PCDHGC4,PCDHGC5 chr5:140870417-140872149 5q31.3 cnaPANCAN187 loss 4.233577 5 149308517 149311654 1 0 0 1 PDE6A chr5:149308517-149311654 5q32 cnaPANCAN188 loss 3.912805 5 149616428 149622634 1 0 0 1 CAMK2A chr5:149616428-149622634 5q32 cnaPANCAN189 loss 2.550595 5 175112861 175113548 1 FRA5G 0 1 1 HRH2 chr5:175112861-175113548 5q35.2 cnaPANCAN190 gain 10.629574 4 1053934 3496661 FGFR3 35 0 0 1 ADD1,C4orf48,CRIPAK,CTBP1,DOK7,FAM193A,FAM53A,FGFR3,GRK4,HAUS3,HGFAC,HTT,LETM1,MAEA,MFSD10,MSANTD1,MXD4,NAT8L,NELFA,NKX1-1,NOP14,POLN,RGS12,RNF212,RNF4,RP11-503N18.3,SH3BP2,SLBP,SPON2,TACC3,TMEM129,TNIP2,UVSSA,WHSC1,ZFYVE28 chr4:1053934-3496661 FGFR3,WHSC1 4p16.3 cnaPANCAN191 gain 1.976532 4 54821383 55111661 PDGFRA 4 FRA4B 1 0 1 CHIC2,FIP1L1,GSX2,PDGFRA chr4:54821383-55111661 FIP1L1,PDGFRA 4q12 cnaPANCAN192 gain 2.237138 4 55118159 55294669 PDGFRA 2 FRA4B 1 0 0 FIP1L1,PDGFRA chr4:55118159-55294669 FIP1L1,PDGFRA 4q12 cnaPANCAN193 loss 2.990169 4 1222201 1240446 1 0 0 1 CTBP1 chr4:1222201-1240446 4p16.3 cnaPANCAN194 loss 2.551196 4 1792651 1797902 FGFR3 1 0 0 1 FGFR3 chr4:1792651-1797902 FGFR3 4p16.3 cnaPANCAN195 loss 5.407111 4 2734062 2744747 2 0 0 1 FAM193A,TNIP2 chr4:2734062-2744747 4p16.3 cnaPANCAN196 loss 13.311306 4 6303194 6307015 1 FRA4A 1 0 1 WFS1 chr4:6303194-6307015 4p16.1 cnaPANCAN197 loss 4.595216 4 7015187 7017113 1 FRA4A 1 0 1 TBC1D14 chr4:7015187-7017113 4p16.1 cnaPANCAN198 loss 5.624845 4 8589393 8594531 2 FRA4A 1 0 1 CPZ,GPR78 chr4:8589393-8594531 4p16.1 cnaPANCAN199 loss 1.335985 4 15985254 15987573 1 FRA4D 1 0 1 PROM1 chr4:15985254-15987573 4p15.32 cnaPANCAN200 loss 4.215723 4 25832290 25847345 1 FRA4D 1 0 1 SEL1L3 chr4:25832290-25847345 4p15.2 cnaPANCAN201 loss 5.326794 4 38138759 38142355 1 0 0 1 TBC1D1 chr4:38138759-38142355 4p14 cnaPANCAN202 loss 3.593381 4 71568097 71572214 1 0 0 1 RUFY3 chr4:71568097-71572214 4q13.3 cnaPANCAN203 loss 5.616463 4 83278277 83281782 1 0 0 1 HNRNPD chr4:83278277-83281782 4q21.22 cnaPANCAN204 loss 2.783897 4 88077504 88083039 1 0 0 1 KLHL8 chr4:88077504-88083039 4q22.1 cnaPANCAN205 loss 8.473335 4 91228245 92427629 2 0 0 0 CCSER1,RP11-763F8.1 chr4:91228245-92427629 4q22.1 cnaPANCAN206 loss 23.120861 4 100575441 100576019 1 0 0 1 RP11-766F14.2 chr4:100575441-100576019 4q23 cnaPANCAN207 loss 6.380846 4 119948016 119948840 1 0 0 1 SYNPO2 chr4:119948016-119948840 4q26 cnaPANCAN208 loss 1.467869 4 134598864 138487116 2 0 0 0 PABPC4L,PCDH18 chr4:134598864-138487116 PCDH18 4q28.3 cnaPANCAN209 loss 4.3043 4 143080258 143083016 1 0 0 1 INPP4B chr4:143080258-143083016 4q31.21 cnaPANCAN210 loss 6.08776 4 157403381 188763651 98 0 0 0 AADAT,ACSL1,ADAM29,AGA,ANKRD37,ANXA10,ASB5,C4orf27,C4orf45,C4orf46,C4orf47,CASP3,CBR4,CCDC110,CDKN2AIP,CENPU,CEP44,CLCN3,CLDN22,CLDN24,CPE,CYP4V2,DCTD,DDX60,DDX60L,ENPP6,ETFDH,F11,FAM149A,FAM198B,FAM218A,FAT1,FBXO8,FNIP2,FSTL5,GALNT7,GALNTL6,GLRA3,GLRB,GPM6A,GRIA2,HAND2,HELT,HMGB2,HPGD,ING2,IRF2,KIAA1430,KLHL2,KLKB1,LINC01098,LRP2BP,MARCH1,MFAP3L,MSMO1,MTNR1A,NAF1,NEIL3,NEK1,NPY1R,NPY5R,PALLD,PDGFC,PDLIM3,PPID,PRIMPOL,RAPGEF2,RP11-171N4.2,RP11-215A19.2,RP11-279O9.4,RP11-487E13.1,RP11-701P16.2,RWDD4,RXFP1,SAP30,SCRG1,SH3RF1,SLC25A4,SNX25,SORBS2,SPATA4,SPCS3,SPOCK3,STOX2,TENM3,TKTL2,TLL1,TLR3,TMA16,TMEM144,TMEM192,TRAPPC11,TRIM60,TRIM61,UFSP2,VEGFC,WDR17,WWC2 chr4:157403381-188763651 FAT1,IRF2 4q32.1 cnaPANCAN211 gain 1.959288 6 11128976 25892194 58 0 0 0 ACOT13,ADTRP,ALDH5A1,ATXN1,C6orf229,C6orf62,CAP2,CD83,CDKAL1,DCDC2,DEK,DTNBP1,E2F3,EDN1,FAM65B,FAM8A1,GFOD1,GMNN,GMPR,GPLD1,HDGFL1,HIST1H2AA,HIST1H2BA,HIVEP1,ID4,JARID2,KAAG1,KDM1B,KIAA0319,KIF13A,LRRC16A,MBOAT1,MCUR1,MRS2,MYLIP,NEDD9,NHLRC1,NOL7,NRSN1,NUP153,PHACTR1,PRL,RANBP9,RBM24,RNF144B,RNF182,SCGN,SIRT5,SLC17A1,SLC17A3,SLC17A4,SMIM13,SOX4,STMND1,TBC1D7,TDP2,TMEM170B,TPMT chr6:11128976-25892194 6p24.2 cnaPANCAN212 gain 1.839294 6 40093822 46079825 85 0 0 1 AARS2,ABCC10,APOBEC2,BYSL,C6orf132,C6orf223,C6orf226,CAPN11,CCND3,CDC5L,CLIC5,CNPY3,CRIP3,CUL7,CUL9,DLK2,DNPH1,FOXP4,FRS3,GLTSCR1L,GNMT,GTPBP2,GUCA1A,GUCA1B,HSP90AB1,KLC4,KLHDC3,LRFN2,LRRC73,MAD2L1BP,MDFI,MEA1,MED20,MRPL14,MRPL2,MRPS10,MRPS18A,NCR2,NFKBIE,NFYA,OARD1,PEX6,PGC,POLH,POLR1C,PPP2R5D,PRICKLE4,PRPH2,PTCRA,PTK7,RP1-139D8.6,RP11-444E17.6,RPL7L1,RRP36,RSPH9,RUNX2,SLC22A7,SLC29A1,SLC35B2,SPATS1,SRF,SUPT3H,TAF8,TBCC,TCTE1,TFEB,TJAP1,TMEM151B,TMEM63B,TOMM6,TREM1,TREM2,TREML1,TREML2,TREML4,TRERF1,TSPO2,TTBK1,UBR2,UNC5CL,USP49,VEGFA,XPO5,YIPF3,ZNF318 chr6:40093822-46079825 HSP90AB1,TRERF1 6p21.2 cnaPANCAN213 gain 5.45467 6 49371436 57206485 50 0 0 1 BAG2,BEND6,BMP5,C6orf141,CENPQ,COL21A1,CRISP1,CRISP2,CRISP3,DEFB110,DEFB112,DEFB113,DEFB114,DST,EFHC1,ELOVL5,FAM83B,FBXO9,GCLC,GCM1,GFRAL,GLYATL3,GSTA1,GSTA2,GSTA3,GSTA4,GSTA5,HCRTR2,HMGCLL1,ICK,IL17A,IL17F,KIAA1586,KLHL31,LRRC1,MCM3,MLIP,MUT,PAQR8,PGK2,PKHD1,PRIM2,RAB23,RHAG,TFAP2B,TFAP2D,TINAG,TMEM14A,TRAM2,ZNF451 chr6:49371436-57206485 MCM3 6p12.3 cnaPANCAN214 gain 7.66107 6 62234533 67371291 7 0 0 0 EYS,FKBP1C,KHDRBS2,LGSN,MTRNR2L9,PHF3,PTP4A1 chr6:62234533-67371291 6q11.1 cnaPANCAN215 loss 4.263246 6 1638654 2357759 1 0 0 1 GMDS chr6:1638654-2357759 6p25.3 cnaPANCAN216 loss 30.110599 6 3280391 3281570 2 0 0 1 PSMG4,SLC22A23 chr6:3280391-3281570 6p25.2 cnaPANCAN217 loss 6.896464 6 10816126 10817328 4 0 0 1 MAK,RP11-637O19.3,SYCP2L,TMEM14B chr6:10816126-10817328 6p24.2 cnaPANCAN218 loss 2.020165 6 12718439 12719259 1 0 0 1 PHACTR1 chr6:12718439-12719259 6p24.1 cnaPANCAN219 loss 11.263206 6 24436594 24438318 1 0 0 1 GPLD1 chr6:24436594-24438318 6p22.3 cnaPANCAN220 loss 3.564908 6 26030470 26033717 HIST1H3B 2 FRA6C 1 0 1 HIST1H2AB,HIST1H3B chr6:26030470-26033717 HIST1H3B 6p22.2 cnaPANCAN221 loss 3.431549 6 27092680 27095422 1 0 0 1 HIST1H2BJ chr6:27092680-27095422 6p22.1 cnaPANCAN222 loss 18.362781 6 30880675 30884929 2 0 0 1 GTF2H4,VARS2 chr6:30880675-30884929 6p21.33 cnaPANCAN223 loss 3.587348 6 30891696 30901280 2 0 0 1 SFTA2,VARS2 chr6:30891696-30901280 6p21.33 cnaPANCAN224 loss 1.349432 6 31101505 31131794 4 0 0 1 CCHCR1,PSORS1C1,PSORS1C2,TCF19 chr6:31101505-31131794 6p21.33 cnaPANCAN225 loss 3.29941 6 41620777 41626906 1 0 0 1 MDFI chr6:41620777-41626906 6p21.1 cnaPANCAN226 loss 2.033493 6 42127991 42130492 2 0 0 1 GUCA1A,RP1-139D8.6 chr6:42127991-42130492 6p21.1 cnaPANCAN227 loss 13.816327 6 73752590 73753934 1 FRA6D 1 0 1 KCNQ5 chr6:73752590-73753934 6q13 cnaPANCAN228 loss 1.495271 6 73839191 73841354 1 FRA6D 1 0 1 KCNQ5 chr6:73839191-73841354 6q13 cnaPANCAN229 loss 3.76789 6 75913646 75917692 1 0 0 1 COL12A1 chr6:75913646-75917692 6q14.1 cnaPANCAN230 loss 3.293845 6 77594668 104651671 80 0 0 0 AKIRIN2,ANKRD6,ASCC3,BACH2,BCKDHB,C6orf163,C6orf164,C6orf165,C6ORF165,CCNC,CGA,CNR1,COQ3,CYB5R4,DOPEY1,ELOVL4,EPHA7,FAM46A,FAXC,FBXL4,FHL5,FUT9,GABRR1,GABRR2,GJA10,GJB7,GPR63,GRIK2,HMGN3,HTR1B,HTR1E,IBTK,IRAK1BP1,KIAA1009,KLHL32,LCA5,LYRM2,MANEA,MAP3K7,MCHR2,MDN1,ME1,MEI4,MMS22L,MRAP2,NDUFAF4,NT5E,ORC3,PGM3,PHIP,PM20D2,PNISR,PNRC1,POU3F2,PRDM13,PRSS35,RARS2,RIPPLY2,RNGTT,RP1-102H19.8,RP11-321N4.5,RRAGD,RWDD2A,SH3BGRL2,SIM1,SLC35A1,SMIM8,SNAP91,SNX14,SPACA1,SRSF12,SYNCRIP,TBX18,TPBG,TTK,UBE2J1,UBE3D,UFL1,USP45,ZNF292 chr6:77594668-104651671 SYNCRIP,ZNF292 6q14.1 cnaPANCAN231 loss 13.231964 6 130453722 130456101 1 0 0 1 L3MBTL3 chr6:130453722-130456101 6q23.1 cnaPANCAN232 loss 2.630852 6 136492519 136496508 1 0 0 1 PDE7B chr6:136492519-136496508 6q23.3 cnaPANCAN233 loss 10.531272 6 149993089 149998391 1 0 0 1 LATS1 chr6:149993089-149998391 6q25.1 cnaPANCAN234 loss 1.560156 6 152509385 152510835 1 0 0 1 SYNE1 chr6:152509385-152510835 6q25.2 cnaPANCAN235 loss 2.387523 6 153326337 170903919 76 0 0 0 ACAT2,AGPAT4,ARID1B,C6orf118,C6orf120,C6orf123,C6orf99,CCR6,CLDN20,CNKSR3,DACT2,DLL1,DYNLT1,ERMARD,EZR,FAM120B,FGFR1OP,FNDC1,FRMD1,GPR31,GTF2H5,IGF2R,IPCEF1,KIF25,LPA,MAP3K4,MAS1,MLLT4,MPC1,MRPL18,NOX3,OPRM1,PACRG,PARK2,PDCD2,PDE10A,PHF10,PLG,PNLDC1,PRR18,PSMB1,QKI,RGS17,RNASET2,RP11-514O12.4,RPS6KA2,RSPH3,SCAF8,SERAC1,SFT2D1,SLC22A1,SLC22A2,SLC22A3,SMOC2,SNX9,SOD2,SYNJ2,SYTL3,T,TAGAP,TBP,TCP1,TCP10,TCP10L2,TCTE3,TFB1M,THBS2,TIAM2,TMEM181,TMEM242,TTLL2,TULP4,UNC93A,WDR27,WTAP,ZDHHC14 chr6:153326337-170903919 ARID1B,MAP3K4,MLLT4 6q25.2 cnaPANCAN236 gain 2.135541 3 11719919 12854350 10 0 0 0 C3orf83,CAND2,MKRN2,PPARG,RAF1,TAMM41,TIMP4,TMEM40,TSEN2,VGLL4 chr3:11719919-12854350 3p25.3 cnaPANCAN237 gain 1.554805 3 12935841 13169504 1 0 0 1 IQSEC1 chr3:12935841-13169504 3p25.2 cnaPANCAN238 gain 9.291466 3 13595327 13864599 2 0 0 1 FBLN2,WNT7A chr3:13595327-13864599 3p25.1 cnaPANCAN239 gain 1.649778 3 68935566 73035982 MITF 15 0 0 1 ARL6IP5,EIF4E3,EOGT,FAM19A4,FOXP1,FRMD4B,GPR27,GXYLT2,LMOD3,MITF,PROK2,RYBP,SHQ1,TMF1,UBA3 chr3:68935566-73035982 FOXP1,MITF 3p14.1 cnaPANCAN240 gain 1.310252 3 131964432 133542784 13 0 0 1 ACAD11,ACKR4,ACPP,BFSP2,CDV3,CPNE4,DNAJC13,NPHP3,SRPRB,TF,TMEM108,TOPBP1,UBA5 chr3:131964432-133542784 3q22.1 cnaPANCAN241 gain 1.305435 3 136200986 137027817 4 0 0 1 IL20RB,NCK1,SLC35G2,STAG1 chr3:136200986-137027817 NCK1,STAG1 3q22.3 cnaPANCAN242 gain 2.650196 3 138179356 138620106 4 0 0 1 CEP70,ESYT3,FAIM,PIK3CB chr3:138179356-138620106 PIK3CB 3q22.3 cnaPANCAN243 gain 2.108202 3 161113975 164375460 1 0 0 0 OTOL1 chr3:161113975-164375460 3q26.1 cnaPANCAN244 gain 9.341446 3 166638578 167109183 1 0 0 1 ZBBX chr3:166638578-167109183 3q26.1 cnaPANCAN245 gain 2.230461 3 167116120 172403682 29 0 0 1 ACTRT3,CLDN11,EIF5A2,FNDC3B,GHSR,GOLIM4,GPR160,LRRC31,LRRC34,LRRIQ4,MECOM,MYNN,NCEH1,PDCD10,PHC3,PLD1,PRKCI,RPL22L1,SAMD7,SEC62,SERPINI1,SERPINI2,SKIL,SLC2A2,SLC7A14,TMEM212,TNFSF10,TNIK,WDR49 chr3:167116120-172403682 MECOM 3q26.1 cnaPANCAN246 gain 2.148145 3 180839625 183511755 SOX2 10 0 0 1 ATP11B,B3GNT5,DCUN1D1,KLHL24,KLHL6,LAMP3,MCCC1,MCF2L2,SOX2,YEATS2 chr3:180839625-183511755 SOX2 3q26.33 cnaPANCAN247 gain 2.334276 3 184293104 184296623 2 FRA3C 1 0 1 EIF2B5,EPHB3 chr3:184293104-184296623 3q27.1 cnaPANCAN248 gain 2.191605 3 186293919 186852040 10 FRA3C 1 0 1 ADIPOQ,AHSG,DNAJB11,EIF4A2,FETUB,HRG,KNG1,RFC4,RPL39L,ST6GAL1 chr3:186293919-186852040 EIF4A2,RFC4 3q27.3 cnaPANCAN249 gain 4.365612 3 189501998 189716353 2 0 0 1 LEPREL1,TP63 chr3:189501998-189716353 3q28 cnaPANCAN250 loss 1.358148 3 2212571 9468735 21 0 0 1 AC018816.3,ARL8B,BHLHE40,CAV3,CNTN4,CRBN,EDEM1,GRM7,IL5RA,ITPR1,LMCD1,LRRN1,OXTR,RAD18,SETD5,SETMAR,SRGAP3,SSUH2,SUMF1,THUMPD3,TRNT1 chr3:2212571-9468735 SRGAP3 3p26.3 cnaPANCAN251 loss 3.710483 3 38347315 38350180 1 0 0 1 SLC22A14 chr3:38347315-38350180 3p22.2 cnaPANCAN252 loss 6.600028 3 38417039 38418761 1 0 0 1 XYLB chr3:38417039-38418761 3p22.2 cnaPANCAN253 loss 2.112439 3 42553166 42555224 1 0 0 1 VIPR1 chr3:42553166-42555224 3p22.1 cnaPANCAN254 loss 1.949488 3 52083828 52092346 1 0 0 1 DUSP7 chr3:52083828-52092346 3p21.2 cnaPANCAN255 loss 17.134074 3 52823922 52833986 2 0 0 1 ITIH1,ITIH3 chr3:52823922-52833986 3p21.1 cnaPANCAN256 loss 2.12681 3 53708472 55793145 CACNA1D 9 0 0 1 ACTR8,CACNA1D,CACNA2D3,CHDH,ERC2,IL17RB,LRTM1,SELK,WNT5A chr3:53708472-55793145 CACNA1D,WNT5A 3p21.1 cnaPANCAN257 loss 1.401522 3 59702134 61218811 1 FRA3B 1 0 1 FHIT chr3:59702134-61218811 3p14.2 cnaPANCAN258 loss 5.997635 3 61558938 62625629 4 FRA3B 1 0 1 C3orf14,CADPS,FEZF2,PTPRG chr3:61558938-62625629 3p14.2 cnaPANCAN259 loss 1.803765 3 64008552 64013363 1 0 0 1 PSMD6 chr3:64008552-64013363 3p14.1 cnaPANCAN260 loss 3.287103 3 64075557 64082529 1 0 0 1 PRICKLE2 chr3:64075557-64082529 3p14.1 cnaPANCAN261 loss 4.976112 3 64639028 64641981 1 0 0 1 ADAMTS9 chr3:64639028-64641981 3p14.1 cnaPANCAN262 loss 2.303695 3 71064958 71556639 1 0 0 1 FOXP1 chr3:71064958-71556639 FOXP1 3p13 cnaPANCAN263 loss 1.821337 3 93734671 97569608 8 0 0 0 ARL13B,ARL6,CRYBG3,DHFRL1,EPHA6,MTRNR2L12,NSUN3,STX19 chr3:93734671-97569608 3q11.1 cnaPANCAN264 loss 5.212173 3 120129853 120132733 1 0 0 1 FSTL1 chr3:120129853-120132733 3q13.33 cnaPANCAN265 loss 4.280564 3 129686630 129699031 1 0 0 1 TRH chr3:129686630-129699031 3q22.1 cnaPANCAN266 loss 2.696359 3 150606779 150609780 2 FRA3D 1 0 1 FAM188B2,RP11-166N6.3 chr3:150606779-150609780 3q25.1 cnaPANCAN267 loss 5.258667 3 172118741 172121040 1 0 0 1 FNDC3B chr3:172118741-172121040 3q26.31 cnaPANCAN268 gain 1.708689 1 10654271 11131050 7 FRA1A 1 0 1 C1orf127,CASZ1,EXOSC10,MASP2,PEX14,SRM,TARDBP chr1:10654271-11131050 1p36.22 cnaPANCAN269 gain 4.329562 1 39481208 43066202 42 0 0 1 BMP8A,BMP8B,CAP1,CCDC30,CITED4,COL9A2,CTPS1,EDN2,EXO5,FOXJ3,FOXO6,GUCA2A,GUCA2B,HEYL,HIVEP3,HPCAL4,KCNQ4,KIAA0754,MACF1,MFSD2A,MYCL,NDUFS5,NFYC,NT5C1A,OXCT2,PABPC4,PPCS,PPIE,PPT1,RIMKLA,RIMS3,RLF,SCMH1,SLFNL1,SMAP2,TMCO2,TRIT1,ZFP69,ZFP69B,ZMPSTE24,ZMYND12,ZNF684 chr1:39481208-43066202 MACF1 1p34.3 cnaPANCAN270 gain 3.054708 1 57530949 60760080 JUN 9 FRA1B 1 0 1 C1orf87,CYP2J2,DAB1,FGGY,HOOK1,JUN,MYSM1,OMA1,TACSTD2 chr1:57530949-60760080 JUN 1p32.2 cnaPANCAN271 gain 1.504988 1 119431029 120527361 NOTCH2 11 0 0 1 ADAM30,HAO2,HMGCS2,HSD3B1,HSD3B2,NOTCH2,PHGDH,REG4,TBX15,WARS2,ZNF697 chr1:119431029-120527361 NOTCH2 1p12 cnaPANCAN272 gain 1.893103 1 150199736 152090961 61 FRA1F 1 0 1 ADAMTSL4,ADAMTSL4-AS1,ANP32E,ANXA9,APH1A,ARNT,BNIPL,C1orf51,C1orf54,C1orf56,C2CD4D,CA14,CDC42SE1,CELF3,CERS2,CGN,CTSK,CTSS,ECM1,ENSA,FAM63A,GABPB2,GOLPH3L,HORMAD1,LINGO4,LYSMD1,MCL1,MLLT11,MRPL9,MRPS21,OAZ3,PI4KB,PIP5K1A,POGZ,PRPF3,PRUNE,PSMB4,PSMD4,RFX5,RIIAD1,RORC,RP11-126K1.2,RPRD2,S100A10,S100A11,SCNM1,SELENBP1,SEMA6C,SETDB1,SNX27,TARS2,TCHH,TCHHL1,TDRKH,THEM4,THEM5,TMOD4,TNFAIP8L2,TUFT1,VPS72,ZNF687 chr1:150199736-152090961 PIP5K1A,SETDB1 1q21.2 cnaPANCAN273 gain 5.138495 1 154891303 155152205 20 0 0 1 ADAM15,CKS1B,DCST1,DCST2,DPM3,EFNA1,EFNA3,EFNA3,EFNA4,FLAD1,KRTCAP2,LENEP,PBXIP1,PMVK,PYGO2,RP11-201K10.3,SHC1,SLC50A1,TRIM46,ZBTB7B chr1:154891303-155152205 1q21.3 cnaPANCAN274 gain 1.52488 1 156051660 156852172 33 0 0 1 APOA1BP,BCAN,BGLAP,C1orf61,C1orf85,CCT3,CRABP2,GPATCH4,HAPLN2,HDGF,INSRR,IQGAP3,ISG20L2,LMNA,MEF2D,MEX3A,MRPL24,NES,NTRK1,PAQR6,PMF1,PMF1-BGLAP,PRCC,RHBG,RRNAD1,SEMA4A,SH2D2A,SLC25A44,SMG5,TMEM79,TSACC,TTC24,VHLL chr1:156051660-156852172 1q22 cnaPANCAN275 gain 1.928417 1 159770218 162931419 SDHC 77 0 0 1 ADAMTS4,APOA2,ARHGAP30,ATF6,ATP1A2,ATP1A4,B4GALT3,C1orf110,C1orf111,C1orf192,C1orf204,C1orf226,CASQ1,CCDC19,CD244,CD48,CD84,COPA,DCAF8,DCAF8,DDR2,DEDD,DUSP12,F11R,FCER1G,FCGR2A,FCGR2B,FCGR3A,FCGR3B,FCRL6,FCRLA,FCRLB,HSD17B7,HSPA6,IGSF8,IGSF9,ITLN1,ITLN2,KCNJ10,KCNJ9,KLHDC9,LY9,MPZ,NCSTN,NDUFS2,NHLH1,NIT1,NOS1AP,NR1I3,OLFML2B,PCP4L1,PEA15,PEX19,PFDN2,PIGM,PPOX,PVRL4,RP11-190A12.7,RP11-544M22.13,RP11-565P22.6,SDHC,SH2D1B,SLAMF1,SLAMF6,SLAMF7,SLAMF8,SLAMF9,TAGLN2,TOMM40L,TSTD1,UAP1,UFC1,UHMK1,USF1,USP21,VANGL2,VSIG8 chr1:159770218-162931419 SDHC 1q23.2 cnaPANCAN276 gain 2.806987 1 180435469 180645167 2 0 0 1 ACBD6,XPR1 chr1:180435469-180645167 1q25.3 cnaPANCAN277 gain 3.267825 1 182851220 183171577 4 0 0 1 DHX9,LAMC1,LAMC2,SHCBP1L chr1:182851220-183171577 DHX9 1q25.3 cnaPANCAN278 gain 1.536284 1 202700248 205529510 MDM4 42 0 0 0 ADIPOR1,ADORA1,ATP2B4,BTG2,CDK18,CHI3L1,CHIT1,CNTN2,CYB5R1,DSTYK,ETNK2,FMOD,GOLT1A,KDM5B,KISS1,KLHDC8A,KLHL12,LAX1,LEMD1,LRRN2,MDM4,MYBPH,MYOG,NFASC,NUAK2,OPTC,PIK3C2B,PLEKHA6,PPFIA4,PPP1R15B,PRELP,RABIF,RBBP5,REN,RP11-480I12.4,SNRPE,SOX13,TMCC2,TMEM183A,TMEM81,ZBED6,ZC3H11A chr1:202700248-205529510 MDM4,PIK3C2B,ZC3H11A 1q32.1 cnaPANCAN279 gain 2.610909 1 210303962 211167491 4 0 0 1 HHAT,KCNH1,SERTAD4,SYT14 chr1:210303962-211167491 1q32.2 cnaPANCAN280 gain 2.322279 1 229390258 245111538 FH 78 0 0 0 ABCB10,ACTA1,ACTN2,ADSS,AGT,AKT3,ARID4B,ARV1,B3GALNT2,C1orf100,C1orf101,C1orf131,C1orf198,CAPN9,CCSAP,CEP170,CHML,CHRM3,COA6,COG2,COX20,DESI2,DISC1,EDARADD,EGLN1,ERO1LB,EXO1,EXOC8,FAM89A,FH,FMN2,GALNT2,GGPS1,GNG4,GNPAT,GPR137B,GREM2,HEATR1,HNRNPU,IRF2BP2,KCNK1,KMO,LGALS8,LYST,MAP10,MAP1LC3C,MLK4,MT1HL1,MTR,MTRNR2L11,NID1,NTPCR,NUP133,OPN3,PCNXL2,PGBD5,PLD5,RAB4A,RBM34,RGS7,RYR2,SDCCAG8,SIPA1L2,SLC35F3,SPHAR,SPRTN,TAF5L,TARBP1,TBCE,TOMM20,TRIM67,TSNAX,TSNAX-DISC1,TTC13,URB2,WDR64,ZBTB18,ZP4 chr1:229390258-245111538 ARID4B,FH 1q42.13 cnaPANCAN281 loss 4.823282 1 3747240 10987811 58 FRA1A 1 0 1 ACOT7,AJAP1,APITD1,APITD1-CORT,C1orf174,C1orf200,CA6,CAMTA1,CASZ1,CEP104,CHD5,CLSTN1,CORT,CTNNBIP1,DFFA,DFFB,DNAJC11,ENO1,ERRFI1,ESPN,GPR153,GPR157,H6PD,HES2,HES3,ICMT,KCNAB2,KIF1B,KLHL21,LZIC,NMNAT1,NOL9,NPHP4,PARK7,PER3,PEX14,PGD,PHF13,PIK3CD,PLEKHG5,RBP7,RERE,RNF207,RPL22,SLC25A33,SLC2A5,SLC2A7,SLC45A1,SPSB1,TAS1R1,THAP3,TMEM201,TNFRSF25,TNFRSF9,UBE4B,UTS2,VAMP3,ZBTB48 chr1:3747240-10987811 RPL22 1p36.32 cnaPANCAN282 loss 3.112467 1 18698884 18704882 1 FRA1A 1 0 1 IGSF21 chr1:18698884-18704882 1p36.13 cnaPANCAN283 loss 53.451142 1 18807738 18812246 1 FRA1A 1 0 1 KLHDC7A chr1:18807738-18812246 1p36.13 cnaPANCAN284 loss 3.66773 1 22979249 22980725 1 FRA1A 1 0 1 C1QB chr1:22979249-22980725 1p36.12 cnaPANCAN285 loss 2.431154 1 24964693 24969680 1 FRA1A 1 0 1 SRRM1 chr1:24964693-24969680 1p36.11 cnaPANCAN286 loss 8.630411 1 28269376 28271877 1 0 0 1 SMPDL3B chr1:28269376-28271877 1p35.3 cnaPANCAN287 loss 2.504585 1 40023929 40026719 1 0 0 1 PABPC4 chr1:40023929-40026719 1p34.3 cnaPANCAN288 loss 5.148751 1 47181123 47186173 1 0 0 1 EFCAB14 chr1:47181123-47186173 1p33 cnaPANCAN289 loss 1.318362 1 51068860 51451727 CDKN2C 2 FRA1B 1 0 1 CDKN2C,FAF1 chr1:51068860-51451727 CDKN2C,FAF1 1p32.3 cnaPANCAN290 loss 2.906677 1 52260383 52265181 1 FRA1B 1 0 1 NRD1 chr1:52260383-52265181 1p32.3 cnaPANCAN291 loss 1.910996 1 64866147 65904580 JAK1 7 FRA1L 1 0 1 AK4,CACHD1,DNAJC6,JAK1,LEPR,LEPROT,RAVER2 chr1:64866147-65904580 JAK1 1p31.3 cnaPANCAN292 loss 1.641883 1 72153686 72585760 1 FRA1L 1 0 1 NEGR1 chr1:72153686-72585760 1p31.1 cnaPANCAN293 loss 3.687971 1 85594452 85596111 1 FRA1D 1 0 1 WDR63 chr1:85594452-85596111 1p22.3 cnaPANCAN294 loss 2.102073 1 94575980 94577443 1 FRA1D 1 0 1 ABCA4 chr1:94575980-94577443 1p22.1 cnaPANCAN295 loss 1.643785 1 113043418 117197039 ATP1A1,NRAS 39 0 0 0 AMPD1,AP4B1,ATP1A1,BCAS2,BCL2L15,CAPZA1,CASQ2,CD58,CSDE1,DCLRE1B,DENND2C,FAM19A3,HIPK1,IGSF3,LRIG2,MAB21L3,MAGI3,MOV10,NGF,NHLH2,NRAS,OLFML3,PHTF1,PPM1J,PTPN22,RHOC,RP11-426L16.10,RSBN1,SIKE1,SLC16A1,SLC22A15,ST7L,SYCP1,SYT6,TRIM33,TSHB,TSPAN2,VANGL1,WNT2B chr1:113043418-117197039 ATP1A1,CSDE1,NRAS 1p13.2 cnaPANCAN296 loss 1.770804 1 169952572 169956001 1 0 0 1 KIFAP3 chr1:169952572-169956001 1q24.2 cnaPANCAN297 loss 1.350511 1 206317702 206413290 1 0 0 1 CTSE chr1:206317702-206413290 1q32.1 cnaPANCAN298 loss 4.883086 1 236899530 236901178 1 0 0 1 ACTN2 chr1:236899530-236901178 1q43 cnaPANCAN299 gain 8.974273 17 25279216 27718022 46 0 0 1 AC015688.3,ALDOC,CRYBA1,CTB-96E2.2,DHRS13,ERAL1,FAM222B,FLOT2,FOXN1,IFT20,KIAA0100,KSR1,LGALS9,LYRM9,MYO18A,NEK8,NLK,NOS2,NUFIP2,PHF12,PIGS,PIPOX,POLDIP2,PROCA1,RAB34,RP11-192H23.4,RP1-66C13.4,RPL23A,SARM1,SDF2,SEZ6,SGK494,SLC13A2,SLC46A1,SPAG5,SUPT6H,TAOK1,TIAF1,TLCD1,TMEM199,TMEM97,TNFAIP1,TRAF4,UNC119,VTN,WSB1 chr17:25279216-27718022 TAOK1 17q11.1 cnaPANCAN300 gain 5.590013 17 36642500 36848051 3 0 0 1 ARHGAP23,C17orf96,SRCIN1 chr17:36642500-36848051 17q12 cnaPANCAN301 gain 1.335929 17 36916673 38481198 CDK12,ERBB2 41 0 0 0 ARL5C,C17orf98,CACNB1,CASC3,CDC6,CDK12,CSF3,CWC25,ERBB2,FBXL20,FBXO47,GRB7,GSDMA,GSDMB,IKZF3,LASP1,LRRC3C,MED1,MED24,MIEN1,MSL1,NEUROD2,NR1D1,ORMDL3,PGAP3,PIP4K2B,PLXDC1,PNMT,PPP1R1B,PSMB3,PSMD3,RAPGEFL1,RARA,RPL19,RPL23,STAC2,STARD3,TCAP,THRA,WIPF2,ZPBP2 chr17:36916673-38481198 CDK12,ERBB2,MED24 17q12 cnaPANCAN302 gain 3.326067 17 57598146 59113326 16 0 0 1 APPBP2,BCAS3,C17orf64,CA4,CLTC,DHX40,HEATR6,PPM1D,PTRH2,RNFT1,RP11-15E18.4,RP11-178C3.1,RPS6KB1,TUBD1,USP32,VMP1 chr17:57598146-59113326 CLTC,PPM1D 17q22 cnaPANCAN303 gain 2.398947 17 73176111 73630493 14 0 0 1 CASKIN2,GGA3,GRB2,KIAA0195,LLGL2,MIF4GD,MRPS7,MYO15B,NUP85,RECQL5,SLC25A19,SMIM5,SUMO2,TSEN54 chr17:73176111-73630493 17q25.1 cnaPANCAN304 loss 1.967546 17 3786838 3787232 1 0 0 1 CAMKK1 chr17:3786838-3787232 17p13.2 cnaPANCAN305 loss 23.858579 17 4005958 4008187 1 0 0 1 ZZEF1 chr17:4005958-4008187 17p13.2 cnaPANCAN306 loss 4.501231 17 4497544 4509760 1 0 0 1 SMTNL2 chr17:4497544-4509760 17p13.2 cnaPANCAN307 loss 1.712715 17 6670630 7987067 TP53 74 0 0 1 AC027763.2,AC129492.6,ACADVL,ACAP1,ALOX12,ALOX12B,ALOX15B,ASGR1,ASGR2,ATP1B2,BCL6B,C17orf49,C17orf61-PLSCR3,C17orf74,CD68,CHD3,CHRNB1,CLDN7,CLEC10A,CNTROB,CTD-2545G14.7,CTDNEP1,CYB5D1,DLG4,DNAH2,DVL2,EFNB3,EIF4A1,EIF5A,ELP5,FBXO39,FGF11,FXR2,GABARAP,GPS2,GUCY2D,KCNAB3,KCTD11,KDM6B,LSMD1,MPDU1,NEURL4,NLGN2,PHF23,POLR2A,RNASEK,RNASEK-C17orf49,RP11-1099M24.7,RP11-542C16.2,RP1-4G17.5,SAT2,SENP3,SHBG,SLC16A11,SLC16A13,SLC2A4,SOX15,SPEM1,TEKT1,TMEM102,TMEM256,TMEM256-PLSCR3,TMEM88,TMEM95,TNFSF12,TNFSF12-TNFSF13,TNFSF13,TNK1,TP53,TRAPPC1,WRAP53,XAF1,YBX2,ZBTB4 chr17:6670630-7987067 CHD3,GPS2,TP53 17p13.1 cnaPANCAN308 loss 3.542504 17 9799555 9804483 1 0 0 1 RCVRN chr17:9799555-9804483 17p13.1 cnaPANCAN309 loss 3.55839 17 10539981 10542917 1 0 0 1 MYH3 chr17:10539981-10542917 17p13.1 cnaPANCAN310 loss 1.787485 17 11050665 12089643 MAP2K4 4 FRA17A 0 1 0 DNAH9,MAP2K4,SHISA6,ZNF18 chr17:11050665-12089643 MAP2K4 17p12 cnaPANCAN311 loss 1.958125 17 17412588 17416099 1 0 0 1 PEMT chr17:17412588-17416099 17p11.2 cnaPANCAN312 loss 8.083084 17 18108529 18116098 1 0 0 1 ALKBH5 chr17:18108529-18116098 17p11.2 cnaPANCAN313 loss 5.225661 17 19640748 19645573 1 0 0 1 ALDH3A1 chr17:19640748-19645573 17p11.2 cnaPANCAN314 loss 1.666902 17 25270517 26578728 8 0 0 0 AC015688.3,KSR1,LGALS9,LYRM9,NLK,NOS2,RP1-66C13.4,WSB1 chr17:25270517-26578728 17q11.1 cnaPANCAN315 loss 2.329855 17 29187273 30278414 NF1 14 0 0 1 AC003101.1,ADAP2,ATAD5,COPRS,CTD-2370N5.3,EVI2A,EVI2B,NF1,OMG,RAB11FIP4,RNF135,SUZ12,TEFM,UTP6 chr17:29187273-30278414 NF1,SUZ12 17q11.2 cnaPANCAN316 loss 5.176065 17 31322881 31326412 1 0 0 1 SPACA3 chr17:31322881-31326412 17q11.2 cnaPANCAN317 loss 3.690005 17 34336700 34340353 1 0 0 1 CCL23 chr17:34336700-34340353 17q12 cnaPANCAN318 loss 2.310799 17 36666887 36670307 1 0 0 1 ARHGAP23 chr17:36666887-36670307 17q12 cnaPANCAN319 loss 2.017167 17 36707759 36710756 1 0 0 1 SRCIN1 chr17:36707759-36710756 17q12 cnaPANCAN320 loss 1.995239 17 37818536 37826755 3 0 0 1 PNMT,STARD3,TCAP chr17:37818536-37826755 17q12 cnaPANCAN321 loss 1.320147 17 38931913 38937488 1 0 0 1 KRT27 chr17:38931913-38937488 17q21.2 cnaPANCAN322 loss 1.655894 17 39596698 39599565 1 0 0 1 KRT38 chr17:39596698-39599565 17q21.2 cnaPANCAN323 loss 3.441496 17 39645151 39647407 1 0 0 1 KRT36 chr17:39645151-39647407 17q21.2 cnaPANCAN324 loss 6.995394 17 46258151 46260957 1 0 0 1 SKAP1 chr17:46258151-46260957 17q21.32 cnaPANCAN325 loss 12.042759 17 67257169 67259189 1 0 0 1 ABCA5 chr17:67257169-67259189 17q24.3 cnaPANCAN326 loss 1.409269 17 70068506 70532966 1 0 0 1 SOX9 chr17:70068506-70532966 SOX9 17q24.3 cnaPANCAN327 loss 4.495481 17 74529366 74532223 2 0 0 1 CYGB,PRCD chr17:74529366-74532223 17q25.1 cnaPANCAN328 loss 4.390835 17 75401150 75402872 1 0 0 1 SEPT9 chr17:75401150-75402872 17q25.3 cnaPANCAN329 loss 4.183423 17 80653919 80917016 6 0 0 1 B3GNTL1,FN3K,FN3KRP,RAB40B,TBCD,ZNF750 chr17:80653919-80917016 ZNF750 17q25.3 cnaPANCAN330 gain 2.215172 23 21740523 39867976 58 0 0 1 ACOT9,APOO,ARX,CHDC2,CXorf21,CXorf22,CXorf27,CXorf30,CXorf58,CYBB,DCAF8L1,DCAF8L2,DDX53,DMD,DYNLT3,EIF2S3,FAM47A,FAM47B,FAM47C,FTHL17,GK,IL1RAPL1,KLHL15,LANCL3,MAGEB1,MAGEB10,MAGEB16,MAGEB18,MAGEB2,MAGEB3,MAGEB4,MAGEB5,MAGEB6,MBTPS2,MID1IP1,NR0B1,OTC,PCYT1B,PDK3,PHEX,POLA1,PRDX4,PRRG1,PTCHD1,RPGR,SAT1,SMPX,SMS,SRPX,SYTL5,TAB3,TM4SF2,TMEM47,TSPAN7,XK,YY2,ZFX,ZNF645 chr23:21740523-39867976 RPGR Xp22.12 cnaPANCAN331 gain 1.997142 23 53665555 58081155 31 0 0 0 ALAS2,APEX2,FAAH2,FAM104B,FAM120C,FGD1,FOXR2,GNL3L,HUWE1,ITIH6,KLF8,MAGED2,MAGEH1,MTRNR2L10,PAGE2,PAGE2B,PAGE3,PAGE5,PFKFB1,PHF8,RRAGB,SPIN2A,SPIN2B,SPIN3,TRO,TSR2,UBQLN2,USP51,WNK3,ZXDA,ZXDB chr23:53665555-58081155 Xp11.22 cnaPANCAN332 gain 1.423719 23 149698344 150838915 7 0 0 1 CD99L2,GPR50,HMGB3,MTM1,MTMR1,PASD1,VMA21 chr23:149698344-150838915 Xq28 cnaPANCAN333 gain 4.497186 23 150942490 154905589 RPL10 93 0 0 1 ABCD1,ARHGAP4,ATP2B3,ATP6AP1,AVPR2,BCAP31,BGN,BRCC3,CETN2,CLIC2,CMC4,CSAG1,CTAG1A,CTAG1B,CTAG2,DKC1,DNASE1L1,DUSP9,EMD,F8,F8A1,F8A2,F8A3,FAM3A,FAM50A,FAM58A,FLNA,FUNDC2,G6PD,GAB3,GABRA3,GABRE,GABRQ,GDI1,H2AFB1,H2AFB2,H2AFB3,HAUS7,HCFC1,IDH3G,IKBKG,IRAK1,L1CAM,LAGE3,LCA10,MAGEA1,MAGEA10,MAGEA12,MAGEA2,MAGEA2B,MAGEA3,MAGEA4,MAGEA6,MECP2,MPP1,MTCP1,NAA10,NSDHL,OPN1LW,OPN1MW,OPN1MW2,PDZD4,PLXNA3,PLXNB3,PNCK,PNMA3,PNMA5,PNMA6A,PNMA6B,PNMA6C,PNMA6D,RAB39B,RENBP,RPL10,SLC10A3,SLC6A8,SMIM9,SRPK3,SSR4,TAZ,TEX28,TEX28P1,TEX28P2,TKTL1,TMEM187,TMLHE,TREX2,U82695.9,UBL4A,VBP1,ZFP92,ZNF185,ZNF275 chr23:150942490-154905589 F8,HCFC1,RPL10 Xq28 cnaPANCAN334 loss 2.066862 23 5821366 5824912 1 0 0 1 NLGN4X chr23:5821366-5824912 Xp22.32 cnaPANCAN335 loss 5.173438 23 29041185 29871762 1 0 0 1 IL1RAPL1 chr23:29041185-29871762 Xp21.3 cnaPANCAN336 loss 2.480339 23 30751050 31420105 3 0 0 1 DMD,FTHL17,TAB3 chr23:30751050-31420105 Xp21.2 cnaPANCAN337 loss 3.745633 23 32670082 32966795 1 0 0 1 DMD chr23:32670082-32966795 Xp21.1 cnaPANCAN338 loss 6.689746 23 44130826 44133450 1 0 0 1 EFHC2 chr23:44130826-44133450 Xp11.3 cnaPANCAN339 loss 2.467172 23 74844653 76920613 ATRX 5 0 0 1 ATRX,FGF16,MAGEE1,MAGEE2,PBDC1 chr23:74844653-76920613 ATRX Xq13.3 cnaPANCAN340 loss 2.684927 23 96339938 96521932 1 0 0 1 DIAPH2 chr23:96339938-96521932 Xq21.33 cnaPANCAN341 loss 1.30492 23 107581692 107946386 2 0 0 1 COL4A5,COL4A6 chr23:107581692-107946386 Xq22.3 cnaPANCAN342 loss 18.537594 23 108686592 108698664 1 0 0 1 GUCY2F chr23:108686592-108698664 Xq22.3 cnaPANCAN343 loss 2.920617 23 153763456 153764915 1 0 0 1 G6PD chr23:153763456-153764915 Xq28 cnaPANCAN344 gain 1.335037 2 13908896 17142471 MYCN 6 0 0 1 AC008271.1,DDX1,FAM49A,FAM84A,MYCN,NBAS chr2:13908896-17142471 MYCN 2p24.3 cnaPANCAN345 gain 3.79814 2 20258963 20777712 4 0 0 1 HS1BP3,PUM2,RHOB,SDC1 chr2:20258963-20777712 2p24.1 cnaPANCAN346 gain 16.087201 2 57982026 64226365 REL,XPO1 22 0 0 1 AHSA2,B3GNT2,BCL11A,CCT4,COMMD1,EHBP1,FAM161A,FANCL,KIAA1841,MDH1,OTX1,PAPOLG,PEX13,PUS10,REL,TMEM17,UGP2,USP34,VPS54,VRK2,WDPCP,XPO1 chr2:57982026-64226365 BCL11A,REL,XPO1 2p16.1 cnaPANCAN347 gain 2.087543 2 69827786 69994594 2 FRA2E 1 0 1 AAK1,ANXA4 chr2:69827786-69994594 2p13.3 cnaPANCAN348 gain 1.723145 2 85897844 86006703 2 0 0 1 ATOH8,GNLY chr2:85897844-86006703 2p11.2 cnaPANCAN349 gain 2.574895 2 95341700 101658437 63 0 0 1 AC092675.3,ACTR1B,ADRA2B,AFF3,ANKRD23,ANKRD36,ANKRD36C,ANKRD39,ARID5A,ASTL,C2orf15,C2ORF15,CHST10,CIAO1,CNGA3,CNNM3,CNNM4,COA5,COX5B,DUSP2,EIF5B,FAHD2A,FAHD2B,FAM178B,GPAT2,INPP4A,ITPRIPL1,KANSL3,KCNIP3,KIAA1211L,LIPT1,LMAN2L,LONRF2,LYG1,LYG2,MAL,MGAT4A,MITD1,MRPL30,MRPL30,MRPS5,NCAPH,NMS,NPAS2,PDCL3,PROM2,REV1,RPL31,SEMA4C,SNRNP200,STARD7,TBC1D8,TEKT4,TMEM127,TMEM131,TRIM43,TSGA10,TXNDC9,UNC50,VWA3B,ZAP70,ZNF2,ZNF514 chr2:95341700-101658437 INPP4A 2q11.1 cnaPANCAN350 gain 4.938381 2 112455061 115445860 30 0 0 0 ACTR3,ANAPC1,CBWD2,CHCHD5,CKAP2L,DPP10,FBLN7,FOXD4L1,IL1A,IL1B,IL1F10,IL1RN,IL36A,IL36B,IL36G,IL36RN,IL37,MERTK,NT5DC4,PAX8,POLR1B,PSD4,RABL2A,RGPD8,SLC20A1,SLC35F5,TMEM87B,TTL,ZC3H6,ZC3H8 chr2:112455061-115445860 2q13 cnaPANCAN351 gain 2.237009 2 177621289 178542362 NFE2L2 6 FRA2G 1 0 1 AGPS,HNRNPA3,NFE2L2,PDE11A,TTC30A,TTC30B chr2:177621289-178542362 NFE2L2 2q31.1 cnaPANCAN352 gain 2.177826 2 190163500 191923178 PMS1 17 0 0 0 ANKAR,ASNSD1,C2orf88,GLS,HIBCH,INPP1,MFSD6,MSTN,NAB1,ORMDL1,OSGEPL1,PMS1,SLC40A1,STAT1,STAT4,TMEM194B,WDR75 chr2:190163500-191923178 PMS1 2q32.2 cnaPANCAN353 loss 10.510854 2 20398979 20401230 1 0 0 1 SDC1 chr2:20398979-20401230 2p24.1 cnaPANCAN354 loss 7.149997 2 28200551 28205277 2 0 0 1 BRE,MRPL33 chr2:28200551-28205277 2p23.2 cnaPANCAN355 loss 4.324655 2 77578574 78173445 1 0 0 1 LRRTM4 chr2:77578574-78173445 2p12 cnaPANCAN356 loss 4.25577 2 121522168 145359558 ERCC3 75 0 0 1 AC013269.5,AC114783.1,AC140481.2,ACMSD,AMER3,AMMECR1L,ANKRD30BL,ARHGAP15,ARHGEF4,BIN1,C2orf27A,C2orf27B,CCDC115,CCDC74A,CCDC74B,CCNT2,CFC1,CFC1B,CLASP1,CNTNAP5,CXCR4,CYP27C1,DARS,ERCC3,FAM168B,GLI2,GPR148,GPR17,GPR39,GTDC1,GYPC,HNMT,HS6ST1,IMP4,IWS1,KYNU,LCT,LIMS2,LRP1B,LYPD1,MAP3K19,MAP3K2,MCM6,MGAT5,MYO7B,MZT2A,MZT2B,NCKAP5,NIFK,NXPH2,PLEKHB2,POLR2D,POTEF,POTEI,POTEJ,PROC,PTPN18,R3HDM1,RAB3GAP1,RAB6C,SAP130,SFT2D3,SMPD4,SPOPL,TFCP2L1,THSD7B,TMEM163,TSN,TUBA3D,TUBA3E,UBXN4,UGGT1,WDR33,ZEB2,ZRANB3 chr2:121522168-145359558 ERCC3 2q14.2 cnaPANCAN357 loss 2.759111 2 148648812 149139962 3 0 0 1 ACVR2A,MBD5,ORC4 chr2:148648812-149139962 ACVR2A 2q22.3 cnaPANCAN358 loss 1.698439 2 186593742 187557008 3 FRA2H 1 0 1 FSIP2,ITGAV,ZC3H15 chr2:186593742-187557008 2q32.1 cnaPANCAN359 loss 2.129376 2 225120605 225450893 2 0 0 1 CUL3,FAM124B chr2:225120605-225450893 CUL3 2q36.1 cnaPANCAN360 loss 4.818876 2 236493265 236815625 2 0 0 1 AC064874.1,AGAP1 chr2:236493265-236815625 2q37.2 cnaPANCAN361 loss 5.077217 2 238528719 242476062 48 FRA2J 1 0 1 AC016757.3,AC062017.1,AC079612.1,AC093802.1,AC104809.3,AC110619.2,AGXT,ANKMY1,ANO7,AQP12A,AQP12B,ASB1,C2orf54,CAPN10,DUSP28,ESPNL,FAM132B,FARP2,GPC1,GPR35,HDAC4,HDLBP,HES6,ILKAP,KIF1A,KLHL30,LRRFIP1,MTERFD2,MYEOV2,NDUFA10,OR6B2,OR6B3,OTOS,PASK,PER2,PPP1R7,PRR21,RAMP1,RBM44,RNPEPL1,SCLY,SEPT2,SNED1,STK25,TRAF3IP1,TWIST2,UBE2F,UBE2F-SCLY chr2:238528719-242476062 2q37.3 cnaPANCAN362 gain 3.450076 20 16036126 26197899 63 0 0 0 ABHD12,ACSS1,APMAP,BANF2,BFSP1,C20orf26,C20orf78,CD93,CRNKL1,CSRP2BP,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,DSTN,DTD1,DZANK1,ENTPD6,FAM182B,FOXA2,GGTLC1,GINS1,GZF1,INSM1,KIF16B,MGME1,NAA20,NANP,NAPB,NINL,NKX2-2,NKX2-4,NXT1,OTOR,OVOL2,PAX1,PCSK2,PET117,POLR3F,PYGB,RALGAPA2,RBBP9,RIN2,RRBP1,SCP2D1,SEC23B,SLC24A3,SNRPB2,SNX5,SSTR4,SYNDIG1,THBD,VSX1,XRN2,ZNF133,ZNF337 chr20:16036126-26197899 CRNKL1,FOXA2 20p12.1 cnaPANCAN363 gain 1.750238 20 29843973 35573430 ASXL1 99 0 0 1 AAR2,ACSS2,ACTL10,AHCY,ASIP,ASXL1,BCL2L1,BPIFA1,BPIFA2,BPIFA3,BPIFB1,BPIFB2,BPIFB3,BPIFB4,BPIFB6,C20orf112,C20orf144,C20orf173,C20orf24,CBFA2T2,CCM2L,CDK5RAP1,CEP250,CHMP4B,CNBD2,COMMD7,COX4I2,CPNE1,DEFB115,DEFB116,DEFB118,DEFB119,DEFB121,DEFB123,DEFB124,DLGAP4,DNMT3B,DSN1,DUSP15,DYNLRB1,E2F1,EDEM2,EFCAB8,EIF2S2,EIF6,EPB41L1,ERGIC3,FAM83C,FOXS1,GDF5,GDF5OS,GGT7,GSS,HCK,HM13,ID1,ITCH,KIF3B,MAP1LC3A,MAPRE1,MMP24,MYH7B,MYL9,MYLK2,NCOA6,NDRG3,NECAB3,NFS1,PDRG1,PHF20,PIGU,PLAGL2,POFUT1,PROCR,PXMP4,RALY,RBM12,RBM39,REM1,ROMO1,RP11-410N8.4,RP1-309K20.6,SAMHD1,SCAND1,SLA2,SNTA1,SOGA1,SPAG4,SUN5,TGIF2,TGIF2-C20orf24,TLDC2,TM9SF4,TP53INP2,TPX2,TRPC4AP,UQCC1,XKR7,ZNF341 chr20:29843973-35573430 ASXL1 20q11.21 cnaPANCAN364 gain 10.084859 20 41923925 44119549 41 0 0 1 ADA,C20orf62,DBNDD2,FITM2,GDAP1L1,GTSF1L,HNF4A,IFT52,JPH2,KCNK15,KCNS1,L3MBTL1,MATN4,MYBL2,OSER1,PABPC1L,PI3,PIGT,PKIG,R3HDML,RBPJL,RIMS4,SDC4,SEMG1,SEMG2,SERINC3,SGK2,SLPI,SRSF6,STK4,SYS1,SYS1-DBNDD2,TOMM34,TOX2,TP53TG5,TTPAL,WFDC12,WFDC2,WFDC5,WISP2,YWHAB chr20:41923925-44119549 STK4 20q13.11 cnaPANCAN365 gain 1.990113 20 45895864 46171570 2 0 0 1 NCOA3,ZMYND8 chr20:45895864-46171570 20q13.12 cnaPANCAN366 gain 2.273513 20 48360756 49844388 16 0 0 1 ADNP,BCAS4,CEBPB,DPM1,FAM65C,KCNG1,MOCS3,PARD6B,PTPN1,RNF114,SLC9A8,SNAI1,SPATA2,TMEM189,TMEM189-UBE2V1,UBE2V1 chr20:48360756-49844388 20q13.13 cnaPANCAN367 gain 2.038738 20 50545324 62219837 GNAS 91 0 0 1 ADRM1,ANKRD60,APCDD1L,ARFGAP1,ATP5E,AURKA,BCAS1,BHLHE23,BIRC7,BMP7,C20orf166,C20orf195,C20orf197,C20orf85,CABLES2,CASS4,CBLN4,CDH26,CDH4,CHRNA4,COL20A1,COL9A3,CSTF1,CTCFL,CTSZ,CYP24A1,DIDO1,DOK5,EDN3,EEF1A2,FAM209A,FAM209B,FAM210B,FAM217B,GATA5,GCNT7,GID8,GMEB2,GNAS,HELZ2,HRH3,KCNQ2,LAMA5,LSM14B,MC3R,MRGBP,MTG2,MTRNR2L3,NELFCD,NKAIN4,NPEPL1,NTSR1,OGFR,OSBPL2,PCK1,PFDN4,PHACTR3,PMEPA1,PPDPF,PPP1R3D,PPP4R1L,PSMA7,PTK6,RAB22A,RAE1,RBBP8NL,RBM38,RP11-429E11.3,RP11-93B14.6,RPS21,RTFDC1,SLC17A9,SLCO4A1,SLMO2,SPO11,SRMS,SS18L1,STX16,STX16-NPEPL1,SYCP2,TAF4,TCFL5,TFAP2C,TSHZ2,TUBB1,VAPB,YTHDF1,ZBP1,ZFP64,ZNF217,ZNF831 chr20:50545324-62219837 ARFGAP1,GNAS 20q13.2 cnaPANCAN368 loss 1.370581 20 14629530 15271024 1 0 0 1 MACROD2 chr20:14629530-15271024 20p12.1 cnaPANCAN369 loss 7.948563 21 15347621 31500240 30 0 0 0 ADAMTS1,ADAMTS5,AF165138.7,APP,ATP5J,BACH1,BTG3,C21orf37,C21orf91,CCT8,CHODL,CXADR,CYYR1,GABPA,GRIK1,HSPA13,JAM2,LIPI,LTN1,MAP3K7CL,MRPL39,N6AMT1,NCAM2,NRIP1,RBM11,RWDD2B,SAMSN1,TMPRSS15,USP16,USP25 chr21:15347621-31500240 21q11.2 cnaPANCAN370 loss 1.572134 21 38784258 38809045 1 0 0 1 DYRK1A chr21:38784258-38809045 21q22.13 cnaPANCAN371 loss 1.824422 21 45719400 45760228 2 0 0 1 C21orf2,PFKL chr21:45719400-45760228 21q22.3 cnaPANCAN372 loss 6.381586 21 45943128 45947767 2 0 0 1 C21orf90,TSPEAR chr21:45943128-45947767 21q22.3 cnaPANCAN373 loss 3.225401 21 46254903 46271390 1 0 0 1 PTTG1IP chr21:46254903-46271390 21q22.3 cnaPANCAN374 gain 2.613937 22 20355270 23054692 38 0 0 1 AC002472.13,AIFM3,CCDC116,CRKL,FAM230A,GGT2,GGTLC2,GGTLC3,HIC2,KLHL22,LL22NC03-63E9.3,LZTR1,MAPK1,MED15,P2RX6,PI4KA,POM121L7,PPIL2,PPM1F,PRAME,RIMBP3,RIMBP3B,RIMBP3C,SCARF2,SDF2L1,SERPIND1,SLC7A4,SNAP29,THAP7,TOP3B,UBE2L3,USP41,VPREB1,YDJC,YPEL1,ZNF280A,ZNF280B,ZNF74 chr22:20355270-23054692 22q11.21 cnaPANCAN375 gain 3.218525 22 30715888 30773104 3 FRA22B 1 0 1 CCDC157,SF3A1,TBC1D10A chr22:30715888-30773104 22q12.2 cnaPANCAN376 gain 7.544285 22 45172361 45176032 2 FRA22A 0 1 1 ARHGAP8,PRR5-ARHGAP8 chr22:45172361-45176032 22q13.31 cnaPANCAN377 loss 2.166857 22 17423930 20355270 46 0 0 1 AC006547.14,AC006946.15,AC008132.13,ARVCF,ATP6V1E1,BCL2L13,BID,C22orf29,C22orf39,CDC45,CECR1,CECR2,CECR5,CECR6,CLDN5,CLTCL1,COMT,DGCR14,DGCR2,DGCR6,DGCR6L,DGCR8,GAB4,GNB1L,GP1BB,GSC2,HIRA,IL17RA,MICAL3,MRPL40,PEX26,PRODH,RANBP1,RTN4R,SEPT5,SLC25A1,SLC25A18,TANGO2,TBX1,TRMT2A,TSSK2,TUBA8,TXNRD2,UFD1L,USP18,ZDHHC8 chr22:17423930-20355270 22q11.1 cnaPANCAN378 loss 2.718467 22 29205461 29558221 3 0 0 1 C22orf31,KREMEN1,ZNRF3 chr22:29205461-29558221 ZNRF3 22q12.1 cnaPANCAN379 loss 2.549643 22 32004680 32025103 2 FRA22B 1 0 1 PISD,SFI1 chr22:32004680-32025103 22q12.2 cnaPANCAN380 loss 12.276206 22 36559249 36585255 2 0 0 1 APOL3,APOL4 chr22:36559249-36585255 22q12.3 cnaPANCAN381 loss 2.513451 22 42147252 49331012 68 FRA22A 0 1 1 A4GALT,ARFGAP3,ARHGAP8,ATP5L2,ATXN10,BIK,C22orf26,CCDC134,CDPF1,CELSR1,CENPM,CERK,CTA-299D3.8,CYB5R3,CYP2D6,EFCAB6,FAM109B,FAM118A,FAM19A5,FBLN1,FLJ27365,GRAMD4,GTSE1,KIAA0930,KIAA1644,LDOC1L,LL22NC03-75H12.2,MCAT,MEI1,MPPED1,NAGA,NDUFA6,NFAM1,NUP50,PACSIN2,PARVB,PARVG,PHF21B,PKDREJ,PNPLA3,PNPLA5,POLDIP3,PPARA,PRR5,PRR5-ARHGAP8,RIBC2,RP1-32I10.10,RRP7A,SAMM50,SCUBE1,SEPT3,SERHL2,SHISA8,SMC1B,SMDT1,SREBF2,SULT4A1,TBC1D22A,TCF20,TNFRSF13C,TRMU,TSPO,TTC38,TTLL1,TTLL12,UPK3A,WBP2NL,WNT7B chr22:42147252-49331012 ARFGAP3 22q13.2 cnaPANCAN382 gain 1.499292 13 26893617 29601545 FLT3 21 0 0 1 ATP5EP2,CDK8,CDX2,FLT1,FLT3,GPR12,GSX1,GTF3A,LNX2,MTIF3,MTUS2,PAN3,PDX1,POLR1D,POMP,RASL11A,RPL21,SLC46A3,URAD,USP12,WASF3 chr13:26893617-29601545 FLT3,WASF3 13q12.13 cnaPANCAN383 gain 2.241089 13 73494500 74402782 3 0 0 1 KLF12,KLF5,PIBF1 chr13:73494500-74402782 13q22.1 cnaPANCAN384 gain 1.466565 13 98035843 114987458 ERCC5 70 0 0 0 ABHD13,ADPRHL1,ANKRD10,ARGLU1,ARHGEF7,ATP11A,ATP4B,BIVM,BIVM-ERCC5,C13orf35,CARKD,CARS2,CLYBL,COL4A1,COL4A2,CUL4A,DAOA,DCUN1D2,DOCK9,EFNB2,ERCC5,F10,F7,FAM155A,FARP1,FGF14,GAS6,GGACT,GPR18,GPR183,GRK1,GRTP1,ING1,IPO5,IRS2,ITGBL1,KDELC1,LAMP1,LIG4,MBNL2,MCF2L,METTL21C,MYO16,NALCN,PCCA,PCID2,PROZ,RAB20,RAP2A,RASA3,RNF113B,RP11-65D24.2,SLC10A2,SLC15A1,SOX1,SPACA7,STK24,TEX29,TEX30,TFDP1,TM9SF2,TMCO3,TMEM255B,TMTC4,TNFSF13B,TPP2,TUBGCP3,UBAC2,ZIC2,ZIC5 chr13:98035843-114987458 ERCC5,ING1,IRS2,TFDP1 13q32.1 cnaPANCAN385 loss 4.597353 13 19450806 26513279 39 0 0 0 AMER2,ATP12A,ATP8A2,C1QTNF9,C1QTNF9B,CENPJ,CRYL1,FGF9,GJA3,GJB2,GJB6,IFT88,IL17D,LATS2,MICU2,MIPEP,MPHOSPH8,MRP63,MTMR6,N6AMT2,NUPL1,PABPC3,PARP4,PSPC1,RNF17,RP11-307N16.6,RP11-408E5.4,SACS,SAP18,SGCG,SKA3,SPATA13,TNFRSF19,TPTE2,TUBA3C,XPO4,ZDHHC20,ZMYM2,ZMYM5 chr13:19450806-26513279 PABPC3,SACS,ZMYM2 13q11 cnaPANCAN386 loss 7.893665 13 29932158 29934227 1 0 0 1 MTUS2 chr13:29932158-29934227 13q12.3 cnaPANCAN387 loss 3.548558 13 33349856 33353013 1 0 0 1 PDS5B chr13:33349856-33353013 13q13.1 cnaPANCAN388 loss 10.553155 13 47322513 47328919 1 0 0 1 LRCH1 chr13:47322513-47328919 13q14.2 cnaPANCAN389 loss 2.76414 13 48851453 50467811 RB1 14 0 0 1 ARL11,CAB39L,CDADC1,CYSLTR2,EBPL,FNDC3A,KPNA3,LPAR6,MLNR,PHF11,RB1,RCBTB1,RCBTB2,SETDB2 chr13:48851453-50467811 RB1 13q14.2 cnaPANCAN390 loss 1.454603 13 101177499 101180424 1 FRA13D 1 0 1 PCCA chr13:101177499-101180424 13q32.3 cnaPANCAN391 loss 4.022449 13 108503909 114984978 38 0 0 1 ABHD13,ADPRHL1,ANKRD10,ARHGEF7,ATP11A,ATP4B,C13orf35,CARKD,CARS2,COL4A1,COL4A2,CUL4A,DCUN1D2,F10,F7,FAM155A,GAS6,GRK1,GRTP1,ING1,IRS2,LAMP1,LIG4,MCF2L,MYO16,PCID2,PROZ,RAB20,RASA3,RP11-65D24.2,SOX1,SPACA7,TEX29,TFDP1,TMCO3,TMEM255B,TNFSF13B,TUBGCP3 chr13:108503909-114984978 ING1,IRS2,TFDP1 13q33.3 cnaPANCAN392 gain 3.5396 14 20501368 22618835 54 0 0 1 AL163636.6,ANG,APEX1,ARHGEF40,CCNB1IP1,CHD8,EDDM3A,EDDM3B,HNRNPC,KLHL33,METTL17,METTL3,NDRG2,OR10G2,OR10G3,OR11G2,OR11H4,OR11H6,OR4E2,OR4K13,OR4K17,OR4L1,OR4N5,OR5AU1,OR6S1,OSGEP,PARP2,PNP,RAB2B,RNASE1,RNASE10,RNASE11,RNASE11,RNASE12,RNASE13,RNASE2,RNASE3,RNASE4,RNASE6,RNASE7,RNASE8,RNASE9,RP11-998D10.1,RPGRIP1,SALL2,SLC39A2,SUPT16H,TEP1,TMEM253,TMEM55B,TOX4,TPPP2,TTC5,ZNF219 chr14:20501368-22618835 CHD8 14q11.2 cnaPANCAN393 gain 1.511857 14 30448088 38635454 FOXA1,NKX2-1 42 0 0 0 AKAP6,AP4S1,ARHGAP5,BAZ1A,BRMS1L,CFL2,COCH,DTD2,EAPP,EGLN3,FAM177A1,FOXA1,G2E3,HEATR5A,HECTD1,INSM2,KIAA0391,KIAA0391,MBIP,MIPOL1,NFKBIA,NKX2-1,NKX2-8,NPAS3,NUBPL,PAX9,PPP2R3C,PRKD1,PSMA6,RALGAPA1,RP11-176H8.1,RP11-187E13.1,RP11-187E13.2,SCFD1,SFTA3,SLC25A21,SLC25A21-AS1,SNX6,SPTSSA,SRP54,STRN3,TTC6 chr14:30448088-38635454 FOXA1,NKX2-1,PSMA6 14q12 cnaPANCAN394 gain 1.82101 14 49193241 55336946 47 0 0 1 ABHD12B,ARF6,ATL1,ATP5S,BMP4,C14orf166,C14orf182,C14orf183,CDKL1,CDKN3,CGRRF1,CNIH1,DDHD1,DNAAF2,ERO1L,FERMT2,FRMD6,GCH1,GMFB,GNG2,GNPNAT1,GPR137C,KLHDC1,KLHDC2,L2HGDH,LRR1,MAP4K5,MGAT2,NEMF,NID2,NIN,POLE2,PSMC6,PTGDR,PTGER2,PYGL,RP11-463J10.2,RPL36AL,RPS29,SAMD4A,SAV1,SOS2,STYX,TMX1,TRIM9,TXNDC16,VCPKMT chr14:49193241-55336946 GNG2,SOS2 14q21.3 cnaPANCAN395 gain 6.444085 14 97201856 105988038 AKT1 78 0 0 1 ADSSL1,AHNAK2,AKT1,AMN,ANKRD9,APOPT1,ASPG,BAG5,BCL11B,BEGAIN,BRF1,BTBD6,C14orf177,C14orf180,C14orf2,C14orf64,C14orf79,C14orf80,CCDC85C,CCNK,CDC42BPB,CDCA4,CEP170B,CINP,CKB,CRIP1,CRIP1,CRIP2,CYP46A1,DEGS2,DIO3,DLK1,DYNC1H1,EIF5,EML1,EVL,EXOC3L4,GPR132,HHIPL1,HSP90AA1,INF2,JAG2,KIF26A,KLC1,MARK3,MOK,MTA1,NUDT14,PACS2,PLD4,PPP1R13B,PPP2R5C,RCOR1,RD3L,RP11-204N11.1,RP11-73M18.2,RP11-796G6.2,RTL1,SETD3,SIVA1,SLC25A29,SLC25A47,TDRD9,TECPR2,TEX22,TMEM179,TNFAIP2,TRAF3,TRMT61A,VRK1,WARS,WDR20,WDR25,XRCC3,YY1,ZBTB42,ZFYVE21,ZNF839 chr14:97201856-105988038 AKT1,HSP90AA1,PPP2R5C 14q32.2 cnaPANCAN396 loss 1.675498 14 20501368 20977623 17 0 0 1 APEX1,CCNB1IP1,KLHL33,OR11G2,OR11H4,OR11H6,OR4K13,OR4K17,OR4L1,OR4N5,OSGEP,PARP2,PNP,RNASE10,TEP1,TMEM55B,TTC5 chr14:20501368-20977623 14q11.2 cnaPANCAN397 loss 3.91319 14 23343097 23357255 2 0 0 1 LRP10,REM2 chr14:23343097-23357255 14q11.2 cnaPANCAN398 loss 2.825781 14 33475248 33843702 1 0 0 1 NPAS3 chr14:33475248-33843702 14q13.1 cnaPANCAN399 loss 6.197328 14 59830243 59831557 1 FRA14B 1 0 1 DAAM1 chr14:59830243-59831557 14q23.1 cnaPANCAN400 loss 17.073485 14 61951226 61952992 1 FRA14B 1 0 1 PRKCH chr14:61951226-61952992 14q23.1 cnaPANCAN401 loss 5.15809 14 68170670 68802555 3 FRA14C 1 0 1 RAD51B,RDH12,ZFYVE26 chr14:68170670-68802555 14q24.1 cnaPANCAN402 loss 5.284798 14 73718588 73721538 1 0 0 1 PAPLN chr14:73718588-73721538 14q24.2 cnaPANCAN403 loss 16.431863 14 73725566 73729228 1 0 0 1 PAPLN chr14:73725566-73729228 14q24.2 cnaPANCAN404 loss 4.10452 14 74422127 74424419 1 0 0 1 COQ6 chr14:74422127-74424419 14q24.3 cnaPANCAN405 loss 6.075482 14 93116501 93119976 1 0 0 1 RIN3 chr14:93116501-93119976 14q32.12 cnaPANCAN406 loss 1.351589 14 93398075 93402373 1 0 0 1 CHGA chr14:93398075-93402373 14q32.12 cnaPANCAN407 loss 2.955754 14 96684014 96684615 2 0 0 1 BDKRB2,RP11-404P21.8 chr14:96684014-96684615 14q32.2 cnaPANCAN408 loss 7.872943 14 100157281 100161379 1 0 0 1 CYP46A1 chr14:100157281-100161379 14q32.2 cnaPANCAN409 loss 8.306407 14 100531405 100535309 1 0 0 1 EVL chr14:100531405-100535309 14q32.2 cnaPANCAN410 loss 2.14255 14 103207455 103352555 1 0 0 1 TRAF3 chr14:103207455-103352555 14q32.32 cnaPANCAN411 gain 4.093527 15 88614625 101884307 BLM,IDH2 76 0 0 0 ABHD2,ACAN,ADAMTS17,AEN,ALDH1A3,ANPEP,AP3S2,ARRDC4,ASB7,BLM,C15orf32,C15orf38,C15orf38-AP3S2,CERS3,CHD2,CHSY1,CIB1,CRTC3,CTD-2054N24.2,DET1,FAM169B,FAM174B,FANCI,FES,FURIN,GDPGP1,HAPLN3,HDDC3,IDH2,IGF1R,IQGAP1,ISG20,KIF7,LINC00923,LINS,LRRC28,LRRK1,LYSMD4,MAN2A2,MCTP2,MEF2A,MESP1,MESP2,MFGE8,MRPL46,MRPS11,NGRN,NR2F2,NTRK3,PCSK6,PEX11A,PGPEP1L,PLIN1,POLG,PRC1,RCCD1,RGMA,RHCG,RLBP1,RP11-697E2.6,SEMA4B,SLCO3A1,SNRPA1,SPATA8,ST8SIA2,SV2B,SYNM,TICRR,TTC23,TTLL13,UNC45A,VIMP,VPS33B,WDR93,ZNF710,ZNF774 chr15:88614625-101884307 BLM,CRTC3,FANCI,IDH2,NR2F2,PCSK6 15q25.3 cnaPANCAN412 loss 30.970704 15 27571787 27573178 1 0 0 1 GABRG3 chr15:27571787-27573178 15q12 cnaPANCAN413 loss 5.238871 15 34118767 34120270 1 0 0 1 RYR3 chr15:34118767-34120270 15q14 cnaPANCAN414 loss 7.400356 15 37237471 37244551 1 0 0 1 MEIS2 chr15:37237471-37244551 15q14 cnaPANCAN415 loss 1.363357 15 39159048 45017547 BUB1B 99 0 0 1 ADAL,ANKRD63,B2M,BAHD1,BMF,BUB1B,C15orf52,C15orf54,C15orf56,C15orf57,C15orf62,CAPN3,CASC4,CASC5,CATSPER2,CCNDBP1,CDAN1,CHAC1,CHP1,CHST14,CKMT1A,CKMT1B,CTDSPL2,DISP2,DLL4,DNAJC17,EHD4,EIF2AK4,EIF3J,ELL3,EPB42,EXD1,FRMD5,FSIP1,GANC,GCHFR,GPR176,HAUS2,HYPK,INO80,ITPKA,IVD,JMJD7,JMJD7-PLA2G4B,KNSTRN,LCMT2,LRRC57,LTK,MAP1A,MAPKBP1,MFAP1,MGA,NDUFAF1,NUSAP1,OIP5,PAK6,PATL2,PDIA3,PHGR1,PLA2G4B,PLA2G4D,PLA2G4E,PLA2G4F,PLCB2,PPIP5K1,PPP1R14D,RAD51,RHOV,RMDN3,RP11-133K1.2,RP11-296A16.1,RPAP1,RPUSD2,RTF1,SERF2,SERINC4,SNAP23,SPG11,SPINT1,SPTBN5,SRP14,STARD9,STRC,TGM5,TGM7,THBS1,TMEM62,TMEM87A,TP53BP1,TTBK2,TUBGCP4,TYRO3,UBR1,VPS18,VPS39,WDR76,ZFYVE19,ZNF106,ZSCAN29 chr15:39159048-45017547 B2M,BUB1B,MGA,TP53BP1 15q14 cnaPANCAN416 loss 1.628926 15 48424460 48429005 1 0 0 1 SLC24A5 chr15:48424460-48429005 15q21.1 cnaPANCAN417 loss 2.358263 15 50533440 50535750 1 0 0 1 HDC chr15:50533440-50535750 15q21.2 cnaPANCAN418 loss 6.227337 15 52442969 52446382 1 0 0 1 GNB5 chr15:52442969-52446382 15q21.2 cnaPANCAN419 loss 5.770139 15 54824602 54825916 1 0 0 1 UNC13C chr15:54824602-54825916 15q21.3 cnaPANCAN420 loss 1.778795 15 59078663 59086427 1 0 0 1 FAM63B chr15:59078663-59086427 15q21.3 cnaPANCAN421 loss 3.882071 15 67307237 67495109 3 FRA15A 1 0 1 AAGAB,RP11-342M21.2,SMAD3 chr15:67307237-67495109 15q22.33 cnaPANCAN422 loss 5.52121 15 70357855 70362990 1 0 0 1 TLE3 chr15:70357855-70362990 15q23 cnaPANCAN423 loss 2.763493 15 71167250 71174136 2 0 0 1 LRRC49,THAP10 chr15:71167250-71174136 15q23 cnaPANCAN424 loss 1.902366 15 82378995 82381022 1 0 0 1 RP11-597K23.2 chr15:82378995-82381022 15q25.2 cnaPANCAN425 loss 1.860938 15 101584228 101592483 1 0 0 1 LRRK1 chr15:101584228-101592483 15q26.3